Gm56796 Gene Detail

Summary

• Symbol
  Gm56796
• Name
  predicted gene, 56796

• Feature Type
  lncRNA gene
• IDs
  MGI:7337505
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:89870649-89878890 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  247 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337505	lncRNA gene	Chr3:89870649-89878890 (+)
129S1/SvImJ	ENSMUSG00200039801	lncRNA gene	Chr3:86726017-86728266 (+)
A/J	ENSMUSG00195053529	lncRNA gene	Chr3:86741172-86743422 (+)
AKR/J	ENSMUSG00220051843	lncRNA gene	Chr3:86695676-86697926 (+)
BALB/cJ	ENSMUSG00180049960	lncRNA gene	Chr3:86832948-86835198 (+)
C3H/HeJ	ENSMUSG00175048085	lncRNA gene	Chr3:86673729-86675978 (+)
C57BL/6NJ	ENSMUSG00215050086	lncRNA gene	Chr3:87113783-87116033 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048433	lncRNA gene	Chr3:86192499-86194752 (+)
CBA/J	ENSMUSG00210048791	lncRNA gene	Chr3:86811382-86813631 (+)
DBA/2J	ENSMUSG00185053484	lncRNA gene	Chr3:86921355-86923604 (+)
FVB/NJ	ENSMUSG00205050038	lncRNA gene	Chr3:85735371-85737620 (+)
JF1/MsJ	ENSUMUG00000052481	lncRNA gene	Chr3:86534958-86537213 (+)
LP/J	ENSMUSG00230036593	lncRNA gene	Chr3:88947268-88949517 (+)
NOD/ShiLtJ	ENSMUSG00190051116	lncRNA gene	Chr3:87199956-87202205 (+)
NZO/HlLtJ	ENSMUSG00225012379	lncRNA gene	Chr3:91705466-91707715 (+)
PWK/PhJ	ENSLUMG00010052904	lncRNA gene	Chr3:86566658-86568915 (+)
SPRET/EiJ	ENSMSPG00010051048	lncRNA gene	Chr3:87439989-87442216 (+)
WSB/EiJ	ENSIUOG00005050469	lncRNA gene	Chr3:87226772-87229021 (+)

Homology

• Gene Tree
  Gm56796
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120086 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120086	Ensembl Gene Model | MGI Sequence Detail	8242	C57BL/6J
transcript	ENSMUST00000241288	Ensembl | MGI Sequence Detail	2293	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56796:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30145	Chr3:89870735-89870769 (+)	103 bp