Gm56793 Gene Detail

Summary

• Symbol
  Gm56793
• Name
  predicted gene, 56793

• Feature Type
  lncRNA gene
• IDs
  MGI:7337499
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:88821316-88822299 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337499	lncRNA gene	Chr3:88821316-88822299 (+)
129S1/SvImJ	ENSMUSG00200039915	lncRNA gene	Chr3:85676263-85677168 (+)
A/J	ENSMUSG00195053331	lncRNA gene	Chr3:85691439-85692344 (+)
AKR/J	ENSMUSG00220051224	lncRNA gene	Chr3:85646076-85646981 (+)
BALB/cJ	ENSMUSG00180049518	lncRNA gene	Chr3:85768810-85769715 (+)
C3H/HeJ	ENSMUSG00175047963	lncRNA gene	Chr3:85624172-85625077 (+)
C57BL/6NJ	ENSMUSG00215050707	lncRNA gene	Chr3:86064011-86064916 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049491	lncRNA gene	Chr3:85144086-85144991 (+)
CBA/J	ENSMUSG00210047906	lncRNA gene	Chr3:85761847-85762752 (+)
DBA/2J	ENSMUSG00185054011	lncRNA gene	Chr3:85857342-85858247 (+)
FVB/NJ	ENSMUSG00205050056	lncRNA gene	Chr3:84685798-84686703 (+)
JF1/MsJ	ENSUMUG00000052971	lncRNA gene	Chr3:85476602-85477506 (+)
LP/J	ENSMUSG00230036356	lncRNA gene	Chr3:87897611-87898516 (+)
NOD/ShiLtJ	ENSMUSG00190051688	lncRNA gene	Chr3:86146495-86147400 (+)
NZO/HlLtJ	ENSMUSG00225007708	lncRNA gene	Chr3:90653134-90654039 (+)
PWK/PhJ	ENSLUMG00010052239	lncRNA gene	Chr3:85518497-85519401 (+)
SPRET/EiJ	ENSMSPG00010050281	lncRNA gene	Chr3:86367964-86368877 (+)
WSB/EiJ	ENSIUOG00005050597	lncRNA gene	Chr3:86167572-86168477 (+)

Homology

• Gene Tree
  Gm56793
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120722 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120722	Ensembl Gene Model | MGI Sequence Detail	984	C57BL/6J
transcript	ENSMUST00000245413	Ensembl | MGI Sequence Detail	984	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56793:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30021	Chr3:88821308-88821342 (+)	9 bp
Tssr30022	Chr3:88821355-88821374 (+)	49 bp