Gm56791 Gene Detail

Summary

• Symbol
  Gm56791
• Name
  predicted gene, 56791

• Feature Type
  lncRNA gene
• IDs
  MGI:7337495
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:69221715-69224148 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337495	lncRNA gene	Chr3:69221715-69224148 (-)
129S1/SvImJ	ENSMUSG00200001702	lncRNA gene	Chr3:65988381-65989963 (-)
A/J	ENSMUSG00195027182	lncRNA gene	Chr3:66097238-66098820 (-)
AKR/J	ENSMUSG00220024757	lncRNA gene	Chr3:66092101-66093685 (-)
BALB/cJ	ENSMUSG00180008743	lncRNA gene	Chr3:66168202-66169786 (-)
C3H/HeJ	ENSMUSG00175003834	lncRNA gene	Chr3:66004823-66006405 (-)
C57BL/6NJ	ENSMUSG00215006619	lncRNA gene	Chr3:66438076-66439658 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022427	lncRNA gene	Chr3:65605297-65606880 (-)
CBA/J	ENSMUSG00210002436	lncRNA gene	Chr3:66102266-66103850 (-)
DBA/2J	ENSMUSG00185015941	lncRNA gene	Chr3:66257238-66258822 (-)
FVB/NJ	ENSMUSG00205009894	lncRNA gene	Chr3:65157861-65159443 (-)
JF1/MsJ	ENSUMUG00000001438	lncRNA gene	Chr3:65831929-65833512 (-)
LP/J	ENSMUSG00230002390	lncRNA gene	Chr3:68275214-68276796 (-)
NOD/ShiLtJ	ENSMUSG00190003313	lncRNA gene	Chr3:66559431-66561015 (-)
NZO/HlLtJ	ENSMUSG00225002412	lncRNA gene	Chr3:70968091-70969673 (-)
PWK/PhJ	ENSLUMG00010015302	lncRNA gene	Chr3:65927977-65929560 (-)
SPRET/EiJ	ENSMSPG00010007961	lncRNA gene	Chr3:66454489-66456073 (-)
WSB/EiJ	ENSIUOG00005016224	lncRNA gene	Chr3:66471499-66473081 (-)

Homology

• Gene Tree
  Gm56791
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120717 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120717	Ensembl Gene Model | MGI Sequence Detail	2434	C57BL/6J
transcript	ENSMUST00000245396	Ensembl | MGI Sequence Detail	2434	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56791:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33543	Chr3:69223774-69223800 (-)	361 bp