Gm56790 Gene Detail

Summary

• Symbol
  Gm56790
• Name
  predicted gene, 56790

• Feature Type
  lncRNA gene
• IDs
  MGI:7337493
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:106460669-106592410 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2863 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337493	lncRNA gene	Chr3:106460669-106592410 (-)
129S1/SvImJ	ENSMUSG00200035790	lncRNA gene	Chr3:103134786-103192636 (-)
A/J	ENSMUSG00195026128	lncRNA gene	Chr3:103565456-103623264 (-)
AKR/J	ENSMUSG00220033619	lncRNA gene	Chr3:101930597-101988416 (-)
BALB/cJ	ENSMUSG00180019783	lncRNA gene	Chr3:103517697-103580908 (-)
C3H/HeJ	ENSMUSG00175030587	lncRNA gene	Chr3:103045691-103103502 (-)
C57BL/6NJ	ENSMUSG00215031109	lncRNA gene	Chr3:103783915-103841771 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027606	lncRNA gene	Chr3:104046903-104104792 (-)
CBA/J	ENSMUSG00210009058	lncRNA gene	Chr3:103667646-103725463 (-)
DBA/2J	ENSMUSG00185023106	lncRNA gene	Chr3:104138818-104196647 (-)
FVB/NJ	ENSMUSG00205030390	lncRNA gene	Chr3:102711108-102768955 (-)
JF1/MsJ	ENSUMUG00000005409	lncRNA gene	Chr3:103091163-103148638 (-)
LP/J	ENSMUSG00230020340	lncRNA gene	Chr3:106062227-106120083 (-)
NOD/ShiLtJ	ENSMUSG00190038952	lncRNA gene	Chr3:104376363-104439564 (-)
NZO/HlLtJ	ENSMUSG00225021004	lncRNA gene	Chr3:108548512-108606631 (-)
PWK/PhJ	ENSLUMG00010024720	lncRNA gene	Chr3:102957159-103014403 (-)
SPRET/EiJ	ENSMSPG00010038877	lncRNA gene	Chr3:103440277-103506369 (-)
WSB/EiJ	ENSIUOG00005004705	lncRNA gene	Chr3:103683289-103741086 (-)

Homology

• Gene Tree
  Gm56790
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120716 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120716	Ensembl Gene Model | MGI Sequence Detail	131742	C57BL/6J
transcript	ENSMUST00000245395	Ensembl | MGI Sequence Detail	1623	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56790:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34985	Chr3:106592207-106592218 (-)	197 bp