Gm56788 Gene Detail

Summary

• Symbol
  Gm56788
• Name
  predicted gene, 56788

• Feature Type
  lncRNA gene
• IDs
  MGI:7337489
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:87415491-87420826 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  239 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337489	lncRNA gene	Chr3:87415491-87420826 (+)
129S1/SvImJ	ENSMUSG00200040252	lncRNA gene	Chr3:84275539-84275945 (+)
A/J	ENSMUSG00195054086	lncRNA gene	Chr3:84298134-84298540 (+)
AKR/J	ENSMUSG00220052412	lncRNA gene	Chr3:84245213-84245619 (+)
BALB/cJ	ENSMUSG00180049595	lncRNA gene	Chr3:84414825-84415231 (+)
C3H/HeJ	ENSMUSG00175050541	lncRNA gene	Chr3:84225910-84226316 (+)
C57BL/6NJ	ENSMUSG00215049970	lncRNA gene	Chr3:84662518-84662924 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049362	lncRNA gene	Chr3:83746921-83747327 (+)
CBA/J	ENSMUSG00210047360	lncRNA gene	Chr3:84368915-84369321 (+)
DBA/2J	ENSMUSG00185052814	lncRNA gene	Chr3:84503564-84503970 (+)
FVB/NJ	ENSMUSG00205051205	lncRNA gene	Chr3:83293678-83294084 (+)
JF1/MsJ	ENSUMUG00000050942	lncRNA gene	Chr3:84046576-84046982 (+)
LP/J	ENSMUSG00230037475	lncRNA gene	Chr3:86496999-86497405 (+)
NOD/ShiLtJ	ENSMUSG00190049418	lncRNA gene	Chr3:84745968-84746374 (+)
NZO/HlLtJ	ENSMUSG00225008353	lncRNA gene	Chr3:89251274-89251680 (+)
PWK/PhJ	ENSLUMG00010052975	lncRNA gene	Chr3:84139659-84140065 (+)
SPRET/EiJ	ENSMSPG00010050245	lncRNA gene	Chr3:84967779-84968181 (+)
WSB/EiJ	ENSIUOG00005050866	lncRNA gene	Chr3:84741604-84742010 (+)

Homology

• Gene Tree
  Gm56788
  

Sequences &
Gene Models

• All Sequences
  46

• Ensembl
  ENSMUSG00000120591 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120591	Ensembl Gene Model | MGI Sequence Detail	5336	C57BL/6J
transcript	ENSMUST00000318101	Ensembl | MGI Sequence Detail	1961	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56788:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr926	Chr3:87420122-87420135 (+)	4,638 bp