Gm56787 Gene Detail

Summary

• Symbol
  Gm56787
• Name
  predicted gene, 56787

• Feature Type
  lncRNA gene
• IDs
  MGI:7337487
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:121084502-121085322 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337487	lncRNA gene	Chr3:121084502-121085322 (-)
129S1/SvImJ	ENSMUSG00200026692	lncRNA gene	Chr3:117766639-117767285 (-)
A/J	ENSMUSG00195015621	lncRNA gene	Chr3:117985940-117986586 (-)
AKR/J	ENSMUSG00220025475	lncRNA gene	Chr3:116377924-116378570 (-)
BALB/cJ	ENSMUSG00180030197	lncRNA gene	Chr3:117922189-117922835 (-)
C3H/HeJ	ENSMUSG00175027708	lncRNA gene	Chr3:117469332-117469978 (-)
C57BL/6NJ	ENSMUSG00215008566	lncRNA gene	Chr3:118217807-118218453 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032857	lncRNA gene	Chr3:118467148-118467796 (-)
CBA/J	ENSMUSG00210003033	lncRNA gene	Chr3:118100298-118100944 (-)
DBA/2J	ENSMUSG00185008449	lncRNA gene	Chr3:118672711-118673366 (-)
FVB/NJ	ENSMUSG00205007547	lncRNA gene	Chr3:117041853-117042499 (-)
JF1/MsJ	ENSUMUG00000003910	lncRNA gene	Chr3:117552820-117553475 (-)
LP/J	ENSMUSG00230011518	lncRNA gene	Chr3:120617321-120617967 (-)
NOD/ShiLtJ	ENSMUSG00190033018	lncRNA gene	Chr3:119053113-119053759 (-)
NZO/HlLtJ	ENSMUSG00225003322	lncRNA gene	Chr3:123111986-123112632 (-)
PWK/PhJ	ENSLUMG00010009406	lncRNA gene	Chr3:117459895-117460550 (-)
SPRET/EiJ	ENSMSPG00010031139	lncRNA gene	Chr3:118187232-118187878 (-)
WSB/EiJ	ENSIUOG00005007356	lncRNA gene	Chr3:118265830-118266476 (-)

Homology

• Gene Tree
  Gm56787
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120588 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120588	Ensembl Gene Model | MGI Sequence Detail	821	C57BL/6J
transcript	ENSMUST00000244366	Ensembl | MGI Sequence Detail	781	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56787:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35412	Chr3:121085247-121085263 (-)	67 bp