Gm56786 Gene Detail

Summary

• Symbol
  Gm56786
• Name
  predicted gene, 56786

• Feature Type
  lncRNA gene
• IDs
  MGI:7337485
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:136374432-136375705 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337485	lncRNA gene	Chr3:136374432-136375705 (-)
129S1/SvImJ	ENSMUSG00200003476	lncRNA gene	Chr3:133160293-133161561 (-)
A/J	ENSMUSG00195004585	lncRNA gene	Chr3:133278073-133279341 (-)
AKR/J	ENSMUSG00220004007	lncRNA gene	Chr3:131738450-131739719 (-)
BALB/cJ	ENSMUSG00180012706	lncRNA gene	Chr3:133194609-133195876 (-)
C3H/HeJ	ENSMUSG00175020953	lncRNA gene	Chr3:132795845-132797112 (-)
C57BL/6NJ	ENSMUSG00215029380	lncRNA gene	Chr3:133532446-133533710 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030993	lncRNA gene	Chr3:133874056-133875323 (-)
CBA/J	ENSMUSG00210032789	lncRNA gene	Chr3:133396349-133397616 (-)
DBA/2J	ENSMUSG00185003595	lncRNA gene	Chr3:134025832-134027101 (-)
FVB/NJ	ENSMUSG00205027955	lncRNA gene	Chr3:132343567-132344835 (-)
JF1/MsJ	ENSUMUG00000006088	lncRNA gene	Chr3:132793905-132795185 (-)
LP/J	ENSMUSG00230003307	lncRNA gene	Chr3:135974192-135975459 (-)
NOD/ShiLtJ	ENSMUSG00190005061	lncRNA gene	Chr3:134412068-134413335 (-)
NZO/HlLtJ	ENSMUSG00225006129	lncRNA gene	Chr3:138454779-138456048 (-)
PWK/PhJ	ENSLUMG00010015993	lncRNA gene	Chr3:132705788-132707060 (-)
SPRET/EiJ	ENSMSPG00010014683	lncRNA gene	Chr3:133833144-133834414 (-)
WSB/EiJ	ENSIUOG00005019559	lncRNA gene	Chr3:133553802-133555068 (-)

Homology

• Gene Tree
  Gm56786
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120358 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120358	Ensembl Gene Model | MGI Sequence Detail	1274	C57BL/6J
transcript	ENSMUST00000242775	Ensembl | MGI Sequence Detail	1274	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56786:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35849	Chr3:136375653-136375698 (-)	29 bp