Gm56784 Gene Detail

Summary

• Symbol
  Gm56784
• Name
  predicted gene, 56784

• Feature Type
  lncRNA gene
• IDs
  MGI:7337481
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:130899824-130900635 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337481	lncRNA gene	Chr3:130899824-130900635 (+)
129S1/SvImJ	ENSMUSG00200003714	lncRNA gene	Chr3:127673450-127673961 (+)
A/J	ENSMUSG00195009310	lncRNA gene	Chr3:127787715-127788226 (+)
AKR/J	ENSMUSG00220023178	lncRNA gene	Chr3:126229710-126230221 (+)
BALB/cJ	ENSMUSG00180003737	lncRNA gene	Chr3:127716667-127717178 (+)
C3H/HeJ	ENSMUSG00175014193	lncRNA gene	Chr3:127288519-127289030 (+)
C57BL/6NJ	ENSMUSG00215022991	lncRNA gene	Chr3:128049418-128049929 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003774	lncRNA gene	Chr3:128373156-128373667 (+)
CBA/J	ENSMUSG00210004184	lncRNA gene	Chr3:127891210-127891721 (+)
DBA/2J	ENSMUSG00185026712	lncRNA gene	Chr3:128510230-128510741 (+)
FVB/NJ	ENSMUSG00205026044	lncRNA gene	Chr3:126843388-126843899 (+)
JF1/MsJ	ENSUMUG00000032263	lncRNA gene	Chr3:127263055-127263566 (+)
LP/J	ENSMUSG00230004473	lncRNA gene	Chr3:130493693-130494204 (+)
NOD/ShiLtJ	ENSMUSG00190001927	lncRNA gene	Chr3:128907483-128907994 (+)
NZO/HlLtJ	ENSMUSG00225005721	lncRNA gene	Chr3:132939126-132939635 (+)
PWK/PhJ	ENSLUMG00010015389	lncRNA gene	Chr3:127257666-127258177 (+)
SPRET/EiJ	ENSMSPG00010013840	lncRNA gene	Chr3:128218149-128218659 (+)
WSB/EiJ	ENSIUOG00005017493	lncRNA gene	Chr3:128044777-128045286 (+)

Homology

• Gene Tree
  Gm56784
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120479 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120479	Ensembl Gene Model | MGI Sequence Detail	812	C57BL/6J
transcript	ENSMUST00000243596	Ensembl | MGI Sequence Detail	812	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56784:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31682	Chr3:130899829-130899840 (+)	11 bp