Gm56783 Gene Detail

Summary

• Symbol
  Gm56783
• Name
  predicted gene, 56783

• Feature Type
  lncRNA gene
• IDs
  MGI:7337479
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:90416271-90419009 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337479	lncRNA gene	Chr3:90416271-90419009 (+)
129S1/SvImJ	ENSMUSG00200040164	lncRNA gene	Chr3:87271941-87273036 (+)
A/J	ENSMUSG00195053405	lncRNA gene	Chr3:87287126-87288221 (+)
AKR/J	ENSMUSG00220051350	lncRNA gene	Chr3:87250634-87251729 (+)
BALB/cJ	ENSMUSG00180049792	lncRNA gene	Chr3:87381064-87382159 (+)
C3H/HeJ	ENSMUSG00175048761	lncRNA gene	Chr3:87219631-87220726 (+)
C57BL/6NJ	ENSMUSG00215049989	lncRNA gene	Chr3:87659689-87660784 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048613	lncRNA gene	Chr3:86741334-86742433 (+)
CBA/J	ENSMUSG00210048708	lncRNA gene	Chr3:87357302-87358397 (+)
DBA/2J	ENSMUSG00185053161	lncRNA gene	Chr3:87468374-87469469 (+)
FVB/NJ	ENSMUSG00205051104	lncRNA gene	Chr3:86280895-86281990 (+)
JF1/MsJ	ENSUMUG00000054196	lncRNA gene	Chr3:87083263-87084363 (+)
LP/J	ENSMUSG00230036248	lncRNA gene	Chr3:89493156-89494251 (+)
NOD/ShiLtJ	ENSMUSG00190050201	lncRNA gene	Chr3:87752811-87753907 (+)
NZO/HlLtJ	ENSMUSG00225012620	lncRNA gene	Chr3:92252402-92253497 (+)
PWK/PhJ	ENSLUMG00010052108	lncRNA gene	Chr3:87116832-87117935 (+)
SPRET/EiJ	ENSMSPG00010051065	lncRNA gene	Chr3:87994997-87996092 (+)
WSB/EiJ	ENSIUOG00005050516	lncRNA gene	Chr3:87772791-87773886 (+)

Homology

• Gene Tree
  Gm56783
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120231 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120231	Ensembl Gene Model | MGI Sequence Detail	2739	C57BL/6J
transcript	ENSMUST00000242006	Ensembl | MGI Sequence Detail	1219	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56783:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30207	Chr3:90416384-90416412 (+)	127 bp
Tssr30208	Chr3:90416947-90416993 (+)	699 bp