Gm56782 Gene Detail

Summary

• Symbol
  Gm56782
• Name
  predicted gene, 56782

• Feature Type
  lncRNA gene
• IDs
  MGI:7337477
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:116601901-116623439 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  735 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337477	lncRNA gene	Chr3:116601901-116623439 (+)
129S1/SvImJ	ENSMUSG00200026802	lncRNA gene	Chr3:113254627-113257085 (+)
A/J	ENSMUSG00195016602	lncRNA gene	Chr3:113505266-113507722 (+)
AKR/J	ENSMUSG00220026666	lncRNA gene	Chr3:111909616-111912073 (+)
BALB/cJ	ENSMUSG00180031804	lncRNA gene	Chr3:113449122-113451578 (+)
C3H/HeJ	ENSMUSG00175027257	lncRNA gene	Chr3:112990038-112992494 (+)
C57BL/6NJ	ENSMUSG00215008006	lncRNA gene	Chr3:113727390-113729846 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033835	lncRNA gene	Chr3:114001029-114003482 (+)
CBA/J	ENSMUSG00210003135	lncRNA gene	Chr3:113598487-113600943 (+)
DBA/2J	ENSMUSG00185007910	lncRNA gene	Chr3:114186352-114188810 (+)
FVB/NJ	ENSMUSG00205029801	lncRNA gene	Chr3:112535266-112537723 (+)
JF1/MsJ	ENSUMUG00000003126	lncRNA gene	Chr3:113084569-113087016 (+)
LP/J	ENSMUSG00230012060	lncRNA gene	Chr3:116115444-116117901 (+)
NOD/ShiLtJ	ENSMUSG00190032900	lncRNA gene	Chr3:114555329-114557785 (+)
NZO/HlLtJ	ENSMUSG00225003729	lncRNA gene	Chr3:118608756-118611213 (+)
PWK/PhJ	ENSLUMG00010009933	lncRNA gene	Chr3:112968283-112970735 (+)
SPRET/EiJ	ENSMSPG00010032614	lncRNA gene	Chr3:113600804-113602978 (+)
WSB/EiJ	ENSIUOG00005007521	lncRNA gene	Chr3:113772006-113774461 (+)

Homology

• Gene Tree
  Gm56782
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120424 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120424	Ensembl Gene Model | MGI Sequence Detail	21539	C57BL/6J
transcript	ENSMUST00000330983	Ensembl | MGI Sequence Detail	2486	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56782:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31365	Chr3:116601911-116601934 (+)	22 bp
Tssr31366	Chr3:116623175-116623193 (+)	21,283 bp