Gm56779 Gene Detail

Summary

• Symbol
  Gm56779
• Name
  predicted gene, 56779

• Feature Type
  lncRNA gene
• IDs
  MGI:7337471
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr3:88040771-88050937 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337471	lncRNA gene	Chr3:88040771-88050937 (-)
129S1/SvImJ	ENSMUSG00200040371	lncRNA gene	Chr3:84900295-84901628 (-)
A/J	ENSMUSG00195053251	lncRNA gene	Chr3:84921928-84923261 (-)
AKR/J	ENSMUSG00220051676	lncRNA gene	Chr3:84870026-84871359 (-)
BALB/cJ	ENSMUSG00180048814	lncRNA gene	Chr3:85039638-85040971 (-)
C3H/HeJ	ENSMUSG00175049261	lncRNA gene	Chr3:84849642-84850975 (-)
C57BL/6NJ	ENSMUSG00215050851	lncRNA gene	Chr3:85288005-85289338 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048194	lncRNA gene	Chr3:84376590-84377925 (-)
CBA/J	ENSMUSG00210048219	lncRNA gene	Chr3:84992642-84993975 (-)
DBA/2J	ENSMUSG00185053297	lncRNA gene	Chr3:85128314-85129647 (-)
FVB/NJ	ENSMUSG00205049903	lncRNA gene	Chr3:83916811-83918144 (-)
JF1/MsJ	ENSUMUG00000052080	lncRNA gene	Chr3:84666298-84667631 (-)
LP/J	ENSMUSG00230037219	lncRNA gene	Chr3:87121695-87123028 (-)
NOD/ShiLtJ	ENSMUSG00190050603	lncRNA gene	Chr3:85369044-85370377 (-)
NZO/HlLtJ	ENSMUSG00225008189	lncRNA gene	Chr3:89877238-89878571 (-)
PWK/PhJ	ENSLUMG00010053005	lncRNA gene	Chr3:84756652-84757986 (-)
SPRET/EiJ	ENSMSPG00010050380	lncRNA gene	Chr3:85597005-85598340 (-)
WSB/EiJ	ENSIUOG00005051048	lncRNA gene	Chr3:85368828-85370162 (-)

Homology

• Gene Tree
  Gm56779
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  41

• Ensembl
  ENSMUSG00000120121 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120121	Ensembl Gene Model | MGI Sequence Detail	10167	C57BL/6J
transcript	ENSMUST00000282496	Ensembl | MGI Sequence Detail	3212	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm56779:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33989	Chr3:88050927-88050938 (-)	4 bp
Tssr33988	Chr3:88050516-88050536 (-)	411 bp
Tssr33987	Chr3:88049481-88049501 (-)	1,446 bp
Tssr33986	Chr3:88048933-88048946 (-)	1,997 bp
Tssr33985	Chr3:88047236-88047252 (-)	3,693 bp
Tssr33984	Chr3:88046740-88046774 (-)	4,180 bp