Gm56777 Gene Detail

Summary

• Symbol
  Gm56777
• Name
  predicted gene, 56777

• Feature Type
  lncRNA gene
• IDs
  MGI:7337467
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:27916834-27917647 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337467	lncRNA gene	Chr3:27916834-27917647 (-)
129S1/SvImJ	ENSMUSG00200024714	lncRNA gene	Chr3:24645779-24646109 (-)
A/J	ENSMUSG00195022138	lncRNA gene	Chr3:24767977-24768307 (-)
AKR/J	ENSMUSG00220008771	lncRNA gene	Chr3:24772850-24773180 (-)
BALB/cJ	ENSMUSG00180035035	lncRNA gene	Chr3:24749838-24750168 (-)
C3H/HeJ	ENSMUSG00175028855	lncRNA gene	Chr3:24758972-24759302 (-)
C57BL/6NJ	ENSMUSG00215018758	lncRNA gene	Chr3:25014129-25014459 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025970	lncRNA gene	Chr3:24597612-24597942 (-)
CBA/J	ENSMUSG00210037738	lncRNA gene	Chr3:24744833-24745163 (-)
DBA/2J	ENSMUSG00185009735	lncRNA gene	Chr3:24982305-24982635 (-)
FVB/NJ	ENSMUSG00205009181	lncRNA gene	Chr3:24304201-24304531 (-)
JF1/MsJ	ENSUMUG00000005422	lncRNA gene	Chr3:24464004-24464333 (-)
LP/J	ENSMUSG00230002159	lncRNA gene	Chr3:26875280-26875610 (-)
NOD/ShiLtJ	ENSMUSG00190036352	lncRNA gene	Chr3:25040931-25041261 (-)
NZO/HlLtJ	ENSMUSG00225007454	lncRNA gene	Chr3:29509814-29510144 (-)
PWK/PhJ	ENSLUMG00010038233	lncRNA gene	Chr3:24454517-24454847 (-)
SPRET/EiJ	ENSMSPG00010024556	lncRNA gene	Chr3:24835375-24835705 (-)
WSB/EiJ	ENSIUOG00005036314	lncRNA gene	Chr3:25017593-25017923 (-)

Homology

• Gene Tree
  Gm56777
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120291 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120291	Ensembl Gene Model | MGI Sequence Detail	814	C57BL/6J
transcript	ENSMUST00000242344	Ensembl | MGI Sequence Detail	814	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56777:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32860	Chr3:27917605-27917620 (-)	34 bp