Gm56773 Gene Detail

Summary

• Symbol
  Gm56773
• Name
  predicted gene, 56773

• Feature Type
  lncRNA gene
• IDs
  MGI:7337459
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:138781173-138782302 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337459	lncRNA gene	Chr3:138781173-138782302 (+)
129S1/SvImJ	ENSMUSG00200003646	lncRNA gene	Chr3:135569936-135570882 (+)
A/J	ENSMUSG00195004590	lncRNA gene	Chr3:135669887-135670833 (+)
AKR/J	ENSMUSG00220004297	lncRNA gene	Chr3:134120617-134121563 (+)
BALB/cJ	ENSMUSG00180012433	lncRNA gene	Chr3:135583942-135584888 (+)
C3H/HeJ	ENSMUSG00175020836	lncRNA gene	Chr3:135187156-135188102 (+)
C57BL/6NJ	ENSMUSG00215027219	lncRNA gene	Chr3:135941050-135941994 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031029	lncRNA gene	Chr3:136308638-136309567 (+)
CBA/J	ENSMUSG00210033592	lncRNA gene	Chr3:135806509-135807455 (+)
DBA/2J	ENSMUSG00185003662	lncRNA gene	Chr3:136413217-136414163 (+)
FVB/NJ	ENSMUSG00205026152	lncRNA gene	Chr3:134722211-134723157 (+)
JF1/MsJ	ENSUMUG00000006203	lncRNA gene	Chr3:135219626-135220615 (+)
LP/J	ENSMUSG00230003386	lncRNA gene	Chr3:138383652-138384598 (+)
NOD/ShiLtJ	ENSMUSG00190005110	lncRNA gene	Chr3:136805323-136806269 (+)
NZO/HlLtJ	ENSMUSG00225006205	lncRNA gene	Chr3:140851583-140852529 (+)
PWK/PhJ	ENSLUMG00010021725	lncRNA gene	Chr3:135117106-135118062 (+)
SPRET/EiJ	ENSMSPG00010014766	lncRNA gene	Chr3:136288321-136289290 (+)
WSB/EiJ	ENSIUOG00005019583	lncRNA gene	Chr3:135981517-135982462 (+)

Homology

• Gene Tree
  Gm56773
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120160 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120160	Ensembl Gene Model | MGI Sequence Detail	1130	C57BL/6J
transcript	ENSMUST00000241680	Ensembl | MGI Sequence Detail	1130	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56773:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32022	Chr3:138781258-138781268 (+)	90 bp