Gm56768 Gene Detail

Summary

• Symbol
  Gm56768
• Name
  predicted gene, 56768

• Feature Type
  lncRNA gene
• IDs
  MGI:7337449
• Alliance
  genome feature page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr14:54678984-54679902 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337449	lncRNA gene	Chr14:54678984-54679902 (+)
129S1/SvImJ	ENSMUSG00200043409	lncRNA gene	Chr14:43259136-43259432 (+)
A/J	ENSMUSG00195036650	lncRNA gene	Chr14:43483427-43483724 (+)
AKR/J	ENSMUSG00220037245	lncRNA gene	Chr14:42811390-42811686 (+)
BALB/cJ	ENSMUSG00180052955	lncRNA gene	Chr14:43107187-43107483 (+)
C3H/HeJ	ENSMUSG00175051655	lncRNA gene	Chr14:44789619-44789915 (+)
C57BL/6NJ	ENSMUSG00215050753	lncRNA gene	Chr14:43001984-43002281 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049709	lncRNA gene	Chr14:44793973-44794269 (+)
CBA/J	ENSMUSG00210048773	lncRNA gene	Chr14:43470171-43470467 (+)
DBA/2J	ENSMUSG00185056367	lncRNA gene	Chr14:48510716-48511011 (+)
FVB/NJ	ENSMUSG00205042733	lncRNA gene	Chr14:42852938-42853233 (+)
JF1/MsJ	ENSUMUG00000053749	lncRNA gene	Chr14:59773266-59773562 (+)
LP/J	ENSMUSG00230053558	lncRNA gene	Chr14:60625099-60625395 (+)
NOD/ShiLtJ	ENSMUSG00190050877	lncRNA gene	Chr14:43213877-43214172 (+)
NZO/HlLtJ	ENSMUSG00225052704	lncRNA gene	Chr14:50923201-50923497 (+)
PWK/PhJ	ENSLUMG00010050179	lncRNA gene	Chr14:42693070-42693366 (+)
SPRET/EiJ	ENSMSPG00010049287	lncRNA gene	Chr14:46098840-46099133 (+)
WSB/EiJ	ENSIUOG00005046303	lncRNA gene	Chr14:42685331-42685627 (+)

Homology

• Gene Tree
  Gm56768
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120849 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120849	Ensembl Gene Model | MGI Sequence Detail	919	C57BL/6J
transcript	ENSMUST00000246100	Ensembl | MGI Sequence Detail	919	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56768:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125639	Chr14:54677353-54677365 (+)	-1,625 bp
Tssr125640	Chr14:54678122-54678138 (+)	-854 bp
Tssr125641	Chr14:54678198-54678213 (+)	-778 bp
Tssr125642	Chr14:54678222-54678235 (+)	-755 bp
Tssr125643	Chr14:54678262-54678275 (+)	-715 bp
Tssr125644	Chr14:54678351-54678362 (+)	-627 bp
Tssr125645	Chr14:54678450-54678467 (+)	-525 bp
Tssr125646	Chr14:54678513-54678572 (+)	-441 bp
Tssr125647	Chr14:54678613-54678648 (+)	-353 bp
Tssr125648	Chr14:54679626-54679637 (+)	648 bp
Tssr125649	Chr14:54679779-54679795 (+)	803 bp