Gm56762 Gene Detail

Summary

• Symbol
  Gm56762
• Name
  predicted gene, 56762

• Feature Type
  lncRNA gene
• IDs
  MGI:7337437
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:122700958-122704223 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337437	lncRNA gene	Chr14:122700958-122704223 (+)
129S1/SvImJ	ENSMUSG00200025572	lncRNA gene	Chr14:111624087-111625645 (+)
A/J	ENSMUSG00195031654	lncRNA gene	Chr14:111354095-111355655 (+)
AKR/J	ENSMUSG00220007898	lncRNA gene	Chr14:111169570-111171131 (+)
BALB/cJ	ENSMUSG00180028477	lncRNA gene	Chr14:110845921-110847481 (+)
C3H/HeJ	ENSMUSG00175001972	lncRNA gene	Chr14:112764691-112766251 (+)
C57BL/6NJ	ENSMUSG00215024663	lncRNA gene	Chr14:110970481-110972041 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007348	lncRNA gene	Chr14:112372582-112374140 (+)
CBA/J	ENSMUSG00210027188	lncRNA gene	Chr14:111730975-111732535 (+)
DBA/2J	ENSMUSG00185013923	lncRNA gene	Chr14:116871503-116873063 (+)
FVB/NJ	ENSMUSG00205007965	lncRNA gene	Chr14:110455378-110456936 (+)
JF1/MsJ	ENSUMUG00000029472	lncRNA gene	Chr14:127877246-127878803 (+)
LP/J	ENSMUSG00230012823	lncRNA gene	Chr14:128842865-128844425 (+)
NOD/ShiLtJ	ENSMUSG00190026131	lncRNA gene	Chr14:111571594-111573154 (+)
NZO/HlLtJ	ENSMUSG00225029295	lncRNA gene	Chr14:118926813-118928372 (+)
PWK/PhJ	ENSLUMG00010029865	lncRNA gene	Chr14:110816814-110818371 (+)
SPRET/EiJ	ENSMSPG00010014541	lncRNA gene	Chr14:115097491-115099032 (+)
WSB/EiJ	ENSIUOG00005031013	lncRNA gene	Chr14:110757519-110759077 (+)

Homology

• Gene Tree
  Gm56762
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  36

• Ensembl
  ENSMUSG00000120496 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120496	Ensembl Gene Model | MGI Sequence Detail	3266	C57BL/6J
transcript	ENSMUST00000243715	Ensembl | MGI Sequence Detail	1854	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56762:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127333	Chr14:122701559-122701572 (+)	608 bp