Gm56758 Gene Detail

Summary

• Symbol
  Gm56758
• Name
  predicted gene, 56758

• Feature Type
  lncRNA gene
• IDs
  MGI:7337429
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:55995168-56032021 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  700 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337429	lncRNA gene	Chr14:55995168-56032021 (+)
129S1/SvImJ	ENSMUSG00200043812	lncRNA gene	Chr14:44583051-44584190 (+)
A/J	ENSMUSG00195035796	lncRNA gene	Chr14:44799796-44800935 (+)
AKR/J	ENSMUSG00220032780	lncRNA gene	Chr14:44127669-44128808 (+)
BALB/cJ	ENSMUSG00180053512	lncRNA gene	Chr14:44423498-44424636 (+)
C3H/HeJ	ENSMUSG00175051353	lncRNA gene	Chr14:46105839-46106978 (+)
C57BL/6NJ	ENSMUSG00215049915	lncRNA gene	Chr14:44318575-44319714 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049610	lncRNA gene	Chr14:46103476-46104601 (+)
CBA/J	ENSMUSG00210047436	lncRNA gene	Chr14:44786380-44787520 (+)
DBA/2J	ENSMUSG00185056195	lncRNA gene	Chr14:49853628-49854769 (+)
FVB/NJ	ENSMUSG00205047672	lncRNA gene	Chr14:44196938-44198077 (+)
JF1/MsJ	ENSUMUG00000046757	lncRNA gene	Chr14:61087046-61088181 (+)
LP/J	ENSMUSG00230053434	lncRNA gene	Chr14:61948912-61950051 (+)
NOD/ShiLtJ	ENSMUSG00190050238	lncRNA gene	Chr14:44560324-44561462 (+)
NZO/HlLtJ	ENSMUSG00225047007	lncRNA gene	Chr14:52239268-52240407 (+)
PWK/PhJ	ENSLUMG00010050200	lncRNA gene	Chr14:44009036-44010175 (+)
SPRET/EiJ	ENSMSPG00010047748	lncRNA gene	Chr14:47411786-47412927 (+)
WSB/EiJ	ENSIUOG00005044827	lncRNA gene	Chr14:44001524-44002659 (+)

Homology

• Gene Tree
  Gm56758
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120426 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120426	Ensembl Gene Model | MGI Sequence Detail	36854	C57BL/6J
transcript	ENSMUST00000285693	Ensembl | MGI Sequence Detail	1417	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56758:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125811	Chr14:55995287-55995313 (+)	132 bp
Tssr125812	Chr14:55995323-55995350 (+)	169 bp
Tssr125818	Chr14:56006283-56006294 (+)	11,121 bp