Gm56754 Gene Detail

Summary

• Symbol
  Gm56754
• Name
  predicted gene, 56754

• Feature Type
  lncRNA gene
• IDs
  MGI:7337421
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:63199146-63203713 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  214 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337421	lncRNA gene	Chr14:63199146-63203713 (-)
129S1/SvImJ	ENSMUSG00200030365	lncRNA gene	Chr14:51801569-51803202 (-)
A/J	ENSMUSG00195034461	lncRNA gene	Chr14:51977586-51979214 (-)
AKR/J	ENSMUSG00220033595	lncRNA gene	Chr14:51324994-51326622 (-)
BALB/cJ	ENSMUSG00180035266	lncRNA gene	Chr14:51599491-51601119 (-)
C3H/HeJ	ENSMUSG00175037464	lncRNA gene	Chr14:53337396-53339030 (-)
C57BL/6NJ	ENSMUSG00215050036	lncRNA gene	Chr14:51529341-51530973 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039818	lncRNA gene	Chr14:53263971-53266309 (-)
CBA/J	ENSMUSG00210043203	lncRNA gene	Chr14:51965495-51967123 (-)
DBA/2J	ENSMUSG00185031965	lncRNA gene	Chr14:57135192-57136825 (-)
FVB/NJ	ENSMUSG00205036224	lncRNA gene	Chr14:51482995-51484624 (-)
JF1/MsJ	ENSUMUG00000048961	lncRNA gene	Chr14:68327818-68329437 (-)
LP/J	ENSMUSG00230037573	lncRNA gene	Chr14:69164768-69166401 (-)
NOD/ShiLtJ	ENSMUSG00190041776	lncRNA gene	Chr14:51760221-51761849 (-)
NZO/HlLtJ	ENSMUSG00225046616	lncRNA gene	Chr14:59502383-59504011 (-)
PWK/PhJ	ENSLUMG00010052199	lncRNA gene	Chr14:51214157-51215776 (-)
SPRET/EiJ	ENSMSPG00010035374	lncRNA gene	Chr14:54695440-54697068 (-)
WSB/EiJ	ENSIUOG00005046202	lncRNA gene	Chr14:51212770-51214400 (-)

Homology

• Gene Tree
  Gm56754
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120500 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120500	Ensembl Gene Model | MGI Sequence Detail	4568	C57BL/6J
transcript	ENSMUST00000243778	Ensembl | MGI Sequence Detail	1634	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56754:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129120	Chr14:63203660-63203674 (-)	46 bp
Tssr129119	Chr14:63203640-63203649 (-)	68 bp
Tssr129118	Chr14:63203632-63203637 (-)	78 bp