Gm56749 Gene Detail

Summary

• Symbol
  Gm56749
• Name
  predicted gene, 56749

• Feature Type
  lncRNA gene
• IDs
  MGI:7337411
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr14:36690794-36769697 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2712 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337411	lncRNA gene	Chr14:36690794-36769697 (+)
129S1/SvImJ	ENSMUSG00200038440	lncRNA gene	Chr14:28593214-28607003 (+)
A/J	ENSMUSG00195014114	lncRNA gene	Chr14:29594741-29608908 (+)
AKR/J	ENSMUSG00220035441	lncRNA gene	Chr14:28745457-28759624 (+)
BALB/cJ	ENSMUSG00180030355	lncRNA gene	Chr14:28683173-28697328 (+)
C3H/HeJ	ENSMUSG00175043258	lncRNA gene	Chr14:28754540-28768697 (+)
C57BL/6NJ	ENSMUSG00215033991	lncRNA gene	Chr14:28994330-29008487 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024846	lncRNA gene	Chr14:28811893-28825156 (+)
CBA/J	ENSMUSG00210044399	lncRNA gene	Chr14:29001052-29015199 (+)
DBA/2J	ENSMUSG00185014534	lncRNA gene	Chr14:33241680-33255843 (+)
FVB/NJ	ENSMUSG00205037390	lncRNA gene	Chr14:28851276-28865421 (+)
JF1/MsJ	ENSUMUG00000035249	lncRNA gene	Chr14:40580285-40594086 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190019879	lncRNA gene	Chr14:29020051-29034179 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010023386	lncRNA gene	Chr14:17103338-17117479 (+)
SPRET/EiJ	ENSMSPG00010003792	lncRNA gene	Chr14:30742987-30756493 (+)
WSB/EiJ	ENSIUOG00005012770	lncRNA gene	Chr14:28787496-28801625 (+)

Homology

• Gene Tree
  Gm56749
  

Sequences &
Gene Models

• All Sequences
  37

• Ensembl
  ENSMUSG00000120145 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120145	Ensembl Gene Model | MGI Sequence Detail	78904	C57BL/6J
transcript	ENSMUST00000345716	Ensembl | MGI Sequence Detail	3505	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56749:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125108	Chr14:36690821-36690839 (+)	36 bp
Tssr125109	Chr14:36691962-36691973 (+)	1,174 bp
Tssr125110	Chr14:36691977-36691987 (+)	1,188 bp
Tssr125111	Chr14:36691998-36692007 (+)	1,209 bp
Tssr125112	Chr14:36692058-36692069 (+)	1,270 bp