Gm56748 Gene Detail

Summary

• Symbol
  Gm56748
• Name
  predicted gene, 56748

• Feature Type
  lncRNA gene
• IDs
  MGI:7337409
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:61918361-61921036 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337409	lncRNA gene	Chr14:61918361-61921036 (+)
129S1/SvImJ	ENSMUSG00200043002	lncRNA gene	Chr14:50510034-50510438 (+)
A/J	ENSMUSG00195035507	lncRNA gene	Chr14:50693719-50694122 (+)
AKR/J	ENSMUSG00220034738	lncRNA gene	Chr14:50040980-50041383 (+)
BALB/cJ	ENSMUSG00180052275	lncRNA gene	Chr14:50315640-50316043 (+)
C3H/HeJ	ENSMUSG00175038573	lncRNA gene	Chr14:52045868-52046272 (+)
C57BL/6NJ	ENSMUSG00215050108	lncRNA gene	Chr14:50245333-50245736 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041002	lncRNA gene	Chr14:51953907-51954315 (+)
CBA/J	ENSMUSG00210047526	lncRNA gene	Chr14:50681717-50682120 (+)
DBA/2J	ENSMUSG00185033904	lncRNA gene	Chr14:55843635-55844039 (+)
FVB/NJ	ENSMUSG00205044632	lncRNA gene	Chr14:50200683-50201086 (+)
JF1/MsJ	ENSUMUG00000047538	lncRNA gene	Chr14:67031172-67031571 (+)
LP/J	ENSMUSG00230037435	lncRNA gene	Chr14:67873261-67873665 (+)
NOD/ShiLtJ	ENSMUSG00190049153	lncRNA gene	Chr14:50478105-50478508 (+)
NZO/HlLtJ	ENSMUSG00225047203	lncRNA gene	Chr14:58219689-58220092 (+)
PWK/PhJ	ENSLUMG00010052273	lncRNA gene	Chr14:49930999-49931402 (+)
SPRET/EiJ	ENSMSPG00010032926	lncRNA gene	Chr14:53335227-53335628 (+)
WSB/EiJ	ENSIUOG00005043715	lncRNA gene	Chr14:49913033-49913438 (+)

Homology

• Gene Tree
  Gm56748
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120127 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120127	Ensembl Gene Model | MGI Sequence Detail	2676	C57BL/6J
transcript	ENSMUST00000320823	Ensembl | MGI Sequence Detail	1056	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56748:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125996	Chr14:61918412-61918444 (+)	67 bp
Tssr125997	Chr14:61918992-61919018 (+)	644 bp
Tssr125998	Chr14:61919426-61919435 (+)	1,070 bp