Gm56744 Gene Detail

Summary

• Symbol
  Gm56744
• Name
  predicted gene, 56744

• Feature Type
  lncRNA gene
• IDs
  MGI:7337401
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:84015230-84016315 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  170 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337401	lncRNA gene	Chr15:84015230-84016315 (-)
129S1/SvImJ	ENSMUSG00200054141	lncRNA gene	Chr15:81141646-81142645 (-)
A/J	ENSMUSG00195052414	lncRNA gene	Chr15:81067417-81068416 (-)
AKR/J	ENSMUSG00220032160	lncRNA gene	Chr15:81114229-81115228 (-)
BALB/cJ	ENSMUSG00180054052	lncRNA gene	Chr15:80944238-80945237 (-)
C3H/HeJ	ENSMUSG00175029246	lncRNA gene	Chr15:81255154-81256153 (-)
C57BL/6NJ	ENSMUSG00215032789	lncRNA gene	Chr15:81033141-81034140 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047982	lncRNA gene	Chr15:80534407-80535468 (-)
CBA/J	ENSMUSG00210013144	lncRNA gene	Chr15:81030123-81031122 (-)
DBA/2J	ENSMUSG00185051735	lncRNA gene	Chr15:81067658-81068656 (-)
FVB/NJ	ENSMUSG00205052465	lncRNA gene	Chr15:80811618-80812617 (-)
JF1/MsJ	ENSUMUG00000056613	lncRNA gene	Chr15:80595728-80596726 (-)
LP/J	ENSMUSG00230046152	lncRNA gene	Chr15:84381908-84382907 (-)
NOD/ShiLtJ	ENSMUSG00190053751	lncRNA gene	Chr15:81047268-81048267 (-)
NZO/HlLtJ	ENSMUSG00225050390	lncRNA gene	Chr15:84713923-84714922 (-)
PWK/PhJ	ENSLUMG00010052511	lncRNA gene	Chr15:80797973-80798971 (-)
SPRET/EiJ	ENSMSPG00010014906	lncRNA gene	Chr15:82452183-82453200 (-)
WSB/EiJ	ENSIUOG00005050565	lncRNA gene	Chr15:81130017-81131015 (-)

Homology

• Gene Tree
  Gm56744
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120528 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120528	Ensembl Gene Model | MGI Sequence Detail	1086	C57BL/6J
transcript	ENSMUST00000243995	Ensembl | MGI Sequence Detail	1086	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56744:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135707	Chr15:84016264-84016278 (-)	44 bp
Tssr135706	Chr15:84016236-84016241 (-)	76 bp