Gm56743 Gene Detail

Summary

• Symbol
  Gm56743
• Name
  predicted gene, 56743

• Feature Type
  lncRNA gene
• IDs
  MGI:7337399
• Alliance
  genome feature page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr15:36770505-36770882 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337399	lncRNA gene	Chr15:36770505-36770882 (-)
129S1/SvImJ	ENSMUSG00200028016	lncRNA gene	Chr15:33780952-33781323 (-)
A/J	ENSMUSG00195036497	lncRNA gene	Chr15:33709127-33709504 (-)
AKR/J	ENSMUSG00220028893	lncRNA gene	Chr15:33623055-33623432 (-)
BALB/cJ	ENSMUSG00180032880	lncRNA gene	Chr15:33671267-33671644 (-)
C3H/HeJ	ENSMUSG00175028534	lncRNA gene	Chr15:33875559-33875936 (-)
C57BL/6NJ	ENSMUSG00215023830	lncRNA gene	Chr15:33683399-33683776 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011306	lncRNA gene	Chr15:33712688-33713062 (-)
CBA/J	ENSMUSG00210018161	lncRNA gene	Chr15:33789992-33790369 (-)
DBA/2J	ENSMUSG00185035936	lncRNA gene	Chr15:33770833-33771210 (-)
FVB/NJ	ENSMUSG00205035518	lncRNA gene	Chr15:33680647-33681024 (-)
JF1/MsJ	ENSUMUG00000035137	lncRNA gene	Chr15:33657169-33657540 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190032922	lncRNA gene	Chr15:33752109-33752486 (-)
NZO/HlLtJ	ENSMUSG00225031880	lncRNA gene	Chr15:37462309-37462686 (-)
PWK/PhJ	ENSLUMG00010033003	lncRNA gene	Chr15:33833073-33833444 (-)
SPRET/EiJ	ENSMSPG00010013241	lncRNA gene	Chr15:34470309-34470700 (-)
WSB/EiJ	ENSIUOG00005032608	lncRNA gene	Chr15:33792702-33793081 (-)

Homology

• Gene Tree
  Gm56743
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000120390 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120390	Ensembl Gene Model | MGI Sequence Detail	378	C57BL/6J
transcript	ENSMUST00000242986	Ensembl | MGI Sequence Detail	378	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56743:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134057	Chr15:36771788-36771799 (-)	-912 bp
Tssr134056	Chr15:36771699-36771719 (-)	-827 bp
Tssr134055	Chr15:36771638-36771661 (-)	-768 bp
Tssr134054	Chr15:36771600-36771615 (-)	-726 bp
Tssr134053	Chr15:36771557-36771568 (-)	-681 bp
Tssr134052	Chr15:36771521-36771535 (-)	-646 bp
Tssr134051	Chr15:36771489-36771516 (-)	-621 bp
Tssr134050	Chr15:36771421-36771442 (-)	-550 bp
Tssr134049	Chr15:36771340-36771419 (-)	-498 bp
Tssr134048	Chr15:36771300-36771331 (-)	-434 bp
Tssr134047	Chr15:36771239-36771254 (-)	-365 bp
Tssr134046	Chr15:36771207-36771218 (-)	-331 bp
Tssr134045	Chr15:36770847-36770870 (-)	23 bp
Tssr134044	Chr15:36770607-36770612 (-)	272 bp