Gm56740 Gene Detail

Summary

• Symbol
  Gm56740
• Name
  predicted gene, 56740

• Feature Type
  lncRNA gene
• IDs
  MGI:7337393
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr15:96538834-96540068 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337393	lncRNA gene	Chr15:96538834-96540068 (+)
129S1/SvImJ	ENSMUSG00200052923	lncRNA gene	Chr15:93733763-93734888 (+)
A/J	ENSMUSG00195047711	lncRNA gene	Chr15:93587776-93588901 (+)
AKR/J	ENSMUSG00220049671	lncRNA gene	Chr15:93585480-93586605 (+)
BALB/cJ	ENSMUSG00180046985	lncRNA gene	Chr15:93511336-93512461 (+)
C3H/HeJ	ENSMUSG00175049453	lncRNA gene	Chr15:93768063-93769188 (+)
C57BL/6NJ	ENSMUSG00215052125	lncRNA gene	Chr15:93574231-93575356 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047277	lncRNA gene	Chr15:93049851-93050976 (+)
CBA/J	ENSMUSG00210032110	lncRNA gene	Chr15:93545405-93546530 (+)
DBA/2J	ENSMUSG00185044386	lncRNA gene	Chr15:93595633-93596758 (+)
FVB/NJ	ENSMUSG00205047485	lncRNA gene	Chr15:93314504-93315629 (+)
JF1/MsJ	ENSUMUG00000057431	lncRNA gene	Chr15:93093533-93094658 (+)
LP/J	ENSMUSG00230041492	lncRNA gene	Chr15:96913399-96914524 (+)
NOD/ShiLtJ	ENSMUSG00190051272	lncRNA gene	Chr15:93605638-93606763 (+)
NZO/HlLtJ	ENSMUSG00225043978	lncRNA gene	Chr15:97213734-97214859 (+)
PWK/PhJ	ENSLUMG00010050076	lncRNA gene	Chr15:93251192-93252317 (+)
SPRET/EiJ	ENSMSPG00010050079	lncRNA gene	Chr15:95077130-95078255 (+)
WSB/EiJ	ENSIUOG00005038446	lncRNA gene	Chr15:93664926-93666051 (+)

Homology

• Gene Tree
  Gm56740
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121185 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121185	Ensembl Gene Model | MGI Sequence Detail	1235	C57BL/6J
transcript	ENSMUST00000247408	Ensembl | MGI Sequence Detail	1235	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56740:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132834	Chr15:96538936-96538951 (+)	110 bp
Tssr132835	Chr15:96539189-96539209 (+)	365 bp
Tssr132836	Chr15:96539510-96539521 (+)	682 bp
Tssr132837	Chr15:96539548-96539628 (+)	754 bp