Gm56739 Gene Detail

Summary

• Symbol
  Gm56739
• Name
  predicted gene, 56739

• Feature Type
  lncRNA gene
• IDs
  MGI:7337391
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:23474513-23474821 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337391	lncRNA gene	Chr15:23474513-23474821 (+)
129S1/SvImJ	ENSMUSG00200028183	lncRNA gene	Chr15:20472379-20472683 (+)
A/J	ENSMUSG00195014708	lncRNA gene	Chr15:20422295-20422600 (+)
AKR/J	ENSMUSG00220047731	lncRNA gene	Chr15:20281233-20281541 (+)
BALB/cJ	ENSMUSG00180005801	lncRNA gene	Chr15:20365437-20365745 (+)
C3H/HeJ	ENSMUSG00175004912	lncRNA gene	Chr15:20472495-20472799 (+)
C57BL/6NJ	ENSMUSG00215005256	lncRNA gene	Chr15:20421272-20421580 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015309	lncRNA gene	Chr15:20477238-20477542 (+)
CBA/J	ENSMUSG00210024839	lncRNA gene	Chr15:20468700-20469004 (+)
DBA/2J	ENSMUSG00185024374	lncRNA gene	Chr15:20461249-20461553 (+)
FVB/NJ	ENSMUSG00205015167	lncRNA gene	Chr15:20390587-20390891 (+)
JF1/MsJ	ENSUMUG00000014407	lncRNA gene	Chr15:20506619-20506922 (+)
LP/J	ENSMUSG00230015958	lncRNA gene	Chr15:23948042-23948346 (+)
NOD/ShiLtJ	ENSMUSG00190012249	lncRNA gene	Chr15:20439273-20439581 (+)
NZO/HlLtJ	ENSMUSG00225032101	lncRNA gene	Chr15:24192439-24192743 (+)
PWK/PhJ	ENSLUMG00010022424	lncRNA gene	Chr15:20625405-20625710 (+)
SPRET/EiJ	ENSMSPG00010024204	lncRNA gene	Chr15:20964718-20965024 (+)
WSB/EiJ	ENSIUOG00005021611	lncRNA gene	Chr15:20459767-20460070 (+)

Homology

• Gene Tree
  Gm56739
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121182 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121182	Ensembl Gene Model | MGI Sequence Detail	309	C57BL/6J
transcript	ENSMUST00000247405	Ensembl | MGI Sequence Detail	309	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56739:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130794	Chr15:23474540-23474544 (+)	29 bp