Gm56738 Gene Detail

Summary

• Symbol
  Gm56738
• Name
  predicted gene, 56738

• Feature Type
  lncRNA gene
• IDs
  MGI:7337389
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:9354826-9357350 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337389	lncRNA gene	Chr15:9354826-9357350 (-)
129S1/SvImJ	ENSMUSG00200034431	lncRNA gene	Chr15:6335092-6337463 (-)
A/J	ENSMUSG00195010400	lncRNA gene	Chr15:6232815-6235186 (-)
AKR/J	ENSMUSG00220023275	lncRNA gene	Chr15:6187061-6189432 (-)
BALB/cJ	ENSMUSG00180036526	lncRNA gene	Chr15:6244865-6247236 (-)
C3H/HeJ	ENSMUSG00175033823	lncRNA gene	Chr15:6402215-6404586 (-)
C57BL/6NJ	ENSMUSG00215029483	lncRNA gene	Chr15:6282509-6284880 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026802	lncRNA gene	Chr15:6353199-6355565 (-)
CBA/J	ENSMUSG00210025517	lncRNA gene	Chr15:6387246-6389617 (-)
DBA/2J	ENSMUSG00185032784	lncRNA gene	Chr15:6344260-6346631 (-)
FVB/NJ	ENSMUSG00205031380	lncRNA gene	Chr15:6233717-6236088 (-)
JF1/MsJ	ENSUMUG00000037087	lncRNA gene	Chr15:6454067-6456433 (-)
LP/J	ENSMUSG00230020381	lncRNA gene	Chr15:9828116-9830487 (-)
NOD/ShiLtJ	ENSMUSG00190010606	lncRNA gene	Chr15:6303598-6305969 (-)
NZO/HlLtJ	ENSMUSG00225024246	lncRNA gene	Chr15:10064660-10067031 (-)
PWK/PhJ	ENSLUMG00010037369	lncRNA gene	Chr15:6496701-6499070 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005030681	lncRNA gene	Chr15:6308167-6310538 (-)

Homology

• Gene Tree
  Gm56738
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120282 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120282	Ensembl Gene Model | MGI Sequence Detail	2525	C57BL/6J
transcript	ENSMUST00000247029	Ensembl | MGI Sequence Detail	2518	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56738:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133691	Chr15:9357159-9357163 (-)	189 bp