Gm56734 Gene Detail

Summary

• Symbol
  Gm56734
• Name
  predicted gene, 56734

• Feature Type
  lncRNA gene
• IDs
  MGI:7337381
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:82238572-82239105 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337381	lncRNA gene	Chr15:82238572-82239105 (+)
129S1/SvImJ	ENSMUSG00200054065	lncRNA gene	Chr15:79352961-79353471 (+)
A/J	ENSMUSG00195052137	lncRNA gene	Chr15:79284614-79285124 (+)
AKR/J	ENSMUSG00220052930	lncRNA gene	Chr15:79327773-79328283 (+)
BALB/cJ	ENSMUSG00180053406	lncRNA gene	Chr15:79161557-79162067 (+)
C3H/HeJ	ENSMUSG00175053023	lncRNA gene	Chr15:79472517-79473027 (+)
C57BL/6NJ	ENSMUSG00215053153	lncRNA gene	Chr15:79256174-79256684 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048287	lncRNA gene	Chr15:78778528-78779038 (+)
CBA/J	ENSMUSG00210049359	lncRNA gene	Chr15:79247617-79248127 (+)
DBA/2J	ENSMUSG00185051676	lncRNA gene	Chr15:79270780-79271290 (+)
FVB/NJ	ENSMUSG00205051849	lncRNA gene	Chr15:79007293-79007814 (+)
JF1/MsJ	ENSUMUG00000056854	lncRNA gene	Chr15:78852043-78852553 (+)
LP/J	ENSMUSG00230045113	lncRNA gene	Chr15:82593343-82593853 (+)
NOD/ShiLtJ	ENSMUSG00190053576	lncRNA gene	Chr15:79264718-79265228 (+)
NZO/HlLtJ	ENSMUSG00225050814	lncRNA gene	Chr15:82931896-82932406 (+)
PWK/PhJ	ENSLUMG00010052570	lncRNA gene	Chr15:79062907-79063413 (+)
SPRET/EiJ	ENSMSPG00010051534	lncRNA gene	Chr15:80704206-80704716 (+)
WSB/EiJ	ENSIUOG00005050525	lncRNA gene	Chr15:79348879-79349389 (+)

Homology

• Gene Tree
  Gm56734
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121118 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121118	Ensembl Gene Model | MGI Sequence Detail	534	C57BL/6J
transcript	ENSMUST00000247199	Ensembl | MGI Sequence Detail	534	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56734:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132387	Chr15:82238595-82238646 (+)	49 bp
Tssr132388	Chr15:82238678-82238709 (+)	122 bp