Gm56733 Gene Detail

Summary

• Symbol
  Gm56733
• Name
  predicted gene, 56733

• Feature Type
  lncRNA gene
• IDs
  MGI:7337379
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:100167923-100169865 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  195 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337379	lncRNA gene	Chr15:100167923-100169865 (+)
129S1/SvImJ	ENSMUSG00200052453	lncRNA gene	Chr15:97374122-97376056 (+)
A/J	ENSMUSG00195045574	lncRNA gene	Chr15:97251264-97253206 (+)
AKR/J	ENSMUSG00220049250	lncRNA gene	Chr15:97244490-97246432 (+)
BALB/cJ	ENSMUSG00180048590	lncRNA gene	Chr15:97149971-97151905 (+)
C3H/HeJ	ENSMUSG00175046689	lncRNA gene	Chr15:97431265-97433207 (+)
C57BL/6NJ	ENSMUSG00215051504	lncRNA gene	Chr15:97206343-97208285 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046782	lncRNA gene	Chr15:96684562-96686506 (+)
CBA/J	ENSMUSG00210032064	lncRNA gene	Chr15:97206841-97208775 (+)
DBA/2J	ENSMUSG00185043382	lncRNA gene	Chr15:97250861-97252803 (+)
FVB/NJ	ENSMUSG00205048895	lncRNA gene	Chr15:96955354-96957296 (+)
JF1/MsJ	ENSUMUG00000057624	lncRNA gene	Chr15:96701583-96703529 (+)
LP/J	ENSMUSG00230041132	lncRNA gene	Chr15:100597470-100599404 (+)
NOD/ShiLtJ	ENSMUSG00190049858	lncRNA gene	Chr15:97226257-97228192 (+)
NZO/HlLtJ	ENSMUSG00225043277	lncRNA gene	Chr15:100843222-100845157 (+)
PWK/PhJ	ENSLUMG00010049621	lncRNA gene	Chr15:96938301-96940242 (+)
SPRET/EiJ	ENSMSPG00010049836	lncRNA gene	Chr15:98734261-98736210 (+)
WSB/EiJ	ENSIUOG00005041951	lncRNA gene	Chr15:97337374-97339316 (+)

Homology

• Gene Tree
  Gm56733
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121144 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121144	Ensembl Gene Model | MGI Sequence Detail	1943	C57BL/6J
transcript	ENSMUST00000247281	Ensembl | MGI Sequence Detail	1943	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56733:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133109	Chr15:100167064-100167071 (+)	-855 bp
Tssr4717	Chr15:100167969-100167984 (+)	54 bp
Tssr133110	Chr15:100169566-100169577 (+)	1,649 bp