Gm56731 Gene Detail

Summary

• Symbol
  Gm56731
• Name
  predicted gene, 56731

• Feature Type
  lncRNA gene
• IDs
  MGI:7337375
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:84075706-84076395 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337375	lncRNA gene	Chr15:84075706-84076395 (-)
129S1/SvImJ	ENSMUSG00200054144	lncRNA gene	Chr15:81202502-81202859 (-)
A/J	ENSMUSG00195052418	lncRNA gene	Chr15:81128145-81128502 (-)
AKR/J	ENSMUSG00220032181	lncRNA gene	Chr15:81175071-81175428 (-)
BALB/cJ	ENSMUSG00180054056	lncRNA gene	Chr15:81004958-81005315 (-)
C3H/HeJ	ENSMUSG00175029264	lncRNA gene	Chr15:81315871-81316228 (-)
C57BL/6NJ	ENSMUSG00215032825	lncRNA gene	Chr15:81093869-81094226 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047998	lncRNA gene	Chr15:80594840-80595238 (-)
CBA/J	ENSMUSG00210013145	lncRNA gene	Chr15:81090845-81091202 (-)
DBA/2J	ENSMUSG00185051721	lncRNA gene	Chr15:81128535-81128892 (-)
FVB/NJ	ENSMUSG00205052473	lncRNA gene	Chr15:80872430-80872787 (-)
JF1/MsJ	ENSUMUG00000056616	lncRNA gene	Chr15:80654067-80654465 (-)
LP/J	ENSMUSG00230045642	lncRNA gene	Chr15:84442765-84443122 (-)
NOD/ShiLtJ	ENSMUSG00190053753	lncRNA gene	Chr15:81107975-81108332 (-)
NZO/HlLtJ	ENSMUSG00225050149	lncRNA gene	Chr15:84774766-84775123 (-)
PWK/PhJ	ENSLUMG00010052517	lncRNA gene	Chr15:80856155-80856553 (-)
SPRET/EiJ	ENSMSPG00010014917	lncRNA gene	Chr15:82507391-82507789 (-)
WSB/EiJ	ENSIUOG00005050552	lncRNA gene	Chr15:81190870-81191227 (-)

Homology

• Gene Tree
  Gm56731
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121117 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121117	Ensembl Gene Model | MGI Sequence Detail	690	C57BL/6J
transcript	ENSMUST00000247197	Ensembl | MGI Sequence Detail	690	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56731:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135712	Chr15:84076307-84076358 (-)	62 bp