Gm56730 Gene Detail

Summary

• Symbol
  Gm56730
• Name
  predicted gene, 56730

• Feature Type
  lncRNA gene
• IDs
  MGI:7337373
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr15:82242751-82252084 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  208 from dbSNP Build 142
• Strain Annotations
  47

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337373	lncRNA gene	Chr15:82242751-82252084 (+)
129S1/SvImJ	ENSMUSG00200054070	lncRNA gene	Chr15:79357985-79362204 (+)
A/J	ENSMUSG00195052144	lncRNA gene	Chr15:79289638-79293857 (+)
AKR/J	ENSMUSG00220052959	lncRNA gene	Chr15:79332797-79337016 (+)
BALB/cJ	ENSMUSG00180053418	lncRNA gene	Chr15:79166581-79170800 (+)
C3H/HeJ	ENSMUSG00175053035	lncRNA gene	Chr15:79477541-79481760 (+)
C57BL/6NJ	ENSMUSG00215026736	lncRNA gene	Chr18:8614405-8619362 (-)
C57BL/6NJ	ENSMUSG00215054147	lncRNA gene	Chr17:38490384-38495296 (+)
C57BL/6NJ	ENSMUSG00215053177	lncRNA gene	Chr15:79264691-79269665 (+)
C57BL/6NJ	ENSMUSG00215037715	lncRNA gene	Chr13:18703443-18708386 (-)
C57BL/6NJ	ENSMUSG00215035122	lncRNA gene	Chr17:61710602-61715519 (+)
C57BL/6NJ	ENSMUSG00215038423	lncRNA gene	Chr6:92071073-92076025 (-)
C57BL/6NJ	ENSMUSG00215004710	lncRNA gene	Chr4:5134835-5139843 (+)
C57BL/6NJ	ENSMUSG00215036031	lncRNA gene	Chr11:2391887-2396812 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210049376	lncRNA gene	Chr15:79252641-79256860 (+)
DBA/2J	ENSMUSG00185051693	lncRNA gene	Chr15:79279297-79284272 (+)
DBA/2J	ENSMUSG00185023892	lncRNA gene	Chr17:64703440-64708356 (+)
DBA/2J	ENSMUSG00185049431	lncRNA gene	Chr2:118815568-118820523 (+)
DBA/2J	ENSMUSG00185000604	lncRNA gene	Chr3:5406876-5411747 (-)
DBA/2J	ENSMUSG00185052664	lncRNA gene	Chr4:137847119-137852097 (-)
DBA/2J	ENSMUSG00185031279	lncRNA gene	ChrX:1530041-1534963 (-)
DBA/2J	ENSMUSG00185011197	lncRNA gene	Chr13:67415329-67420294 (-)
DBA/2J	ENSMUSG00185019538	lncRNA gene	Chr11:2478724-2483649 (-)
DBA/2J	ENSMUSG00185003162	lncRNA gene	Chr12:83263035-83268033 (+)
FVB/NJ	ENSMUSG00205027678	lncRNA gene	Chr8:111369247-111374219 (+)
FVB/NJ	ENSMUSG00205020403	lncRNA gene	Chr17:62477974-62482895 (+)
FVB/NJ	ENSMUSG00205006406	lncRNA gene	Chr17:84130040-84135040 (-)
FVB/NJ	ENSMUSG00205038742	lncRNA gene	Chr18:3557070-3561942 (-)
FVB/NJ	ENSMUSG00205051863	lncRNA gene	Chr15:79012277-79017260 (+)
FVB/NJ	ENSMUSG00205053263	lncRNA gene	Chr2:81059955-81064858 (+)
FVB/NJ	ENSMUSG00205050253	lncRNA gene	Chr5:128691922-128696776 (+)
FVB/NJ	ENSMUSG00205030220	lncRNA gene	Chr6:112017270-112022215 (-)
FVB/NJ	ENSMUSG00205033733	lncRNA gene	Chr15:7301890-7306807 (+)
FVB/NJ	ENSMUSG00205013172	lncRNA gene	Chr1:113416463-113421369 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230045122	lncRNA gene	Chr15:82598367-82602586 (+)
NOD/ShiLtJ	ENSMUSG00190053589	lncRNA gene	Chr15:79269742-79273961 (+)
NZO/HlLtJ	ENSMUSG00225050854	lncRNA gene	Chr15:82936920-82941139 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005053108	lncRNA gene	Chr2:25251385-25256381 (-)
WSB/EiJ	ENSIUOG00005006141	lncRNA gene	Chr7:43786562-43791381 (-)
WSB/EiJ	ENSIUOG00005014750	lncRNA gene	Chr4:5025838-5030848 (+)
WSB/EiJ	ENSIUOG00005023863	lncRNA gene	Chr9:119298131-119303083 (-)
WSB/EiJ	ENSIUOG00005031259	lncRNA gene	Chr15:7372804-7377725 (+)
WSB/EiJ	ENSIUOG00005028842	lncRNA gene	Chr18:8766827-8771789 (-)
WSB/EiJ	ENSIUOG00005050531	lncRNA gene	Chr15:79357396-79362371 (+)
WSB/EiJ	ENSIUOG00005001646	lncRNA gene	Chr2:100989874-100994965 (-)
WSB/EiJ	ENSIUOG00005002506	lncRNA gene	Chr12:1914526-1919468 (+)
WSB/EiJ	ENSIUOG00005047249	lncRNA gene	Chr12:80642915-80647916 (+)

Homology

• Gene Tree
  Gm56730
  

Sequences &
Gene Models

• All Sequences
  56

• Ensembl
  ENSMUSG00000121069 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121069	Ensembl Gene Model | MGI Sequence Detail	9334	C57BL/6J
transcript	ENSMUST00000247064	Ensembl | MGI Sequence Detail	4975	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56730:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132389	Chr15:82242491-82242495 (+)	-258 bp
Tssr132390	Chr15:82242745-82242785 (+)	14 bp
Tssr132391	Chr15:82242786-82242798 (+)	41 bp
Tssr132392	Chr15:82247111-82247114 (+)	4,362 bp