Gm56727 Gene Detail

Summary

• Symbol
  Gm56727
• Name
  predicted gene, 56727

• Feature Type
  lncRNA gene
• IDs
  MGI:7337367
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:79241076-79241969 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337367	lncRNA gene	Chr15:79241076-79241969 (-)
129S1/SvImJ	ENSMUSG00200053775	lncRNA gene	Chr15:76352787-76353676 (-)
A/J	ENSMUSG00195051858	lncRNA gene	Chr15:76295582-76296470 (-)
AKR/J	ENSMUSG00220053178	lncRNA gene	Chr15:76338977-76339865 (-)
BALB/cJ	ENSMUSG00180053784	lncRNA gene	Chr15:76172565-76173453 (-)
C3H/HeJ	ENSMUSG00175053541	lncRNA gene	Chr15:76483806-76484694 (-)
C57BL/6NJ	ENSMUSG00215053542	lncRNA gene	Chr15:76251442-76252330 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049219	lncRNA gene	Chr15:75795197-75796085 (-)
CBA/J	ENSMUSG00210050067	lncRNA gene	Chr15:76258949-76259837 (-)
DBA/2J	ENSMUSG00185052561	lncRNA gene	Chr15:76268834-76269722 (-)
FVB/NJ	ENSMUSG00205052500	lncRNA gene	Chr15:75988671-75989559 (-)
JF1/MsJ	ENSUMUG00000056125	lncRNA gene	Chr15:75847580-75848468 (-)
LP/J	ENSMUSG00230052586	lncRNA gene	Chr15:79601222-79602111 (-)
NOD/ShiLtJ	ENSMUSG00190053858	lncRNA gene	Chr15:76278675-76279564 (-)
NZO/HlLtJ	ENSMUSG00225053657	lncRNA gene	Chr15:79930894-79931782 (-)
PWK/PhJ	ENSLUMG00010052584	lncRNA gene	Chr15:76067396-76068284 (-)
SPRET/EiJ	ENSMSPG00010051580	lncRNA gene	Chr15:77728967-77729851 (-)
WSB/EiJ	ENSIUOG00005049681	lncRNA gene	Chr15:76335220-76336108 (-)

Homology

• Gene Tree
  Gm56727
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121075 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121075	Ensembl Gene Model | MGI Sequence Detail	894	C57BL/6J
transcript	ENSMUST00000247078	Ensembl | MGI Sequence Detail	894	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56727:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135335	Chr15:79241989-79242000 (-)	-26 bp
Tssr135334	Chr15:79241934-79241951 (-)	26 bp
Tssr135333	Chr15:79241911-79241924 (-)	51 bp