Gm56712 Gene Detail

Summary

• Symbol
  Gm56712
• Name
  predicted gene, 56712

• Feature Type
  lncRNA gene
• IDs
  MGI:7337338
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:78910900-78912345 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337338	lncRNA gene	Chr15:78910900-78912345 (+)
129S1/SvImJ	ENSMUSG00200053706	lncRNA gene	Chr15:76024416-76025048 (+)
A/J	ENSMUSG00195051679	lncRNA gene	Chr15:75966090-75966722 (+)
AKR/J	ENSMUSG00220052767	lncRNA gene	Chr15:76009508-76010140 (+)
BALB/cJ	ENSMUSG00180053665	lncRNA gene	Chr15:75843090-75843722 (+)
C3H/HeJ	ENSMUSG00175053367	lncRNA gene	Chr15:76154374-76155006 (+)
C57BL/6NJ	ENSMUSG00215053047	lncRNA gene	Chr15:75921508-75922140 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049094	lncRNA gene	Chr15:75466224-75466857 (+)
CBA/J	ENSMUSG00210049983	lncRNA gene	Chr15:75929486-75930118 (+)
DBA/2J	ENSMUSG00185051181	lncRNA gene	Chr15:75939381-75940013 (+)
FVB/NJ	ENSMUSG00205050940	lncRNA gene	Chr15:75659207-75659839 (+)
JF1/MsJ	ENSUMUG00000056580	lncRNA gene	Chr15:75516640-75517270 (+)
LP/J	ENSMUSG00230052584	lncRNA gene	Chr15:79272841-79273473 (+)
NOD/ShiLtJ	ENSMUSG00190053601	lncRNA gene	Chr15:75950306-75950938 (+)
NZO/HlLtJ	ENSMUSG00225053645	lncRNA gene	Chr15:79601069-79601701 (+)
PWK/PhJ	ENSLUMG00010052750	lncRNA gene	Chr15:75736704-75737334 (+)
SPRET/EiJ	ENSMSPG00010050452	lncRNA gene	Chr15:77402310-77402941 (+)
WSB/EiJ	ENSIUOG00005049811	lncRNA gene	Chr15:76005337-76005969 (+)

Homology

• Gene Tree
  Gm56712
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120518 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120518	Ensembl Gene Model | MGI Sequence Detail	1446	C57BL/6J
transcript	ENSMUST00000243930	Ensembl | MGI Sequence Detail	1446	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56712:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132041	Chr15:78911191-78911205 (+)	298 bp