Gm56711 Gene Detail

Summary

• Symbol
  Gm56711
• Name
  predicted gene, 56711

• Feature Type
  lncRNA gene
• IDs
  MGI:7337336
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr15:82029921-82031759 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337336	lncRNA gene	Chr15:82029921-82031759 (-)
129S1/SvImJ	ENSMUSG00200053833	lncRNA gene	Chr15:79144518-79145267 (-)
A/J	ENSMUSG00195051774	lncRNA gene	Chr15:79076131-79076880 (-)
AKR/J	ENSMUSG00220053234	lncRNA gene	Chr15:79119281-79120030 (-)
BALB/cJ	ENSMUSG00180053447	lncRNA gene	Chr15:78953076-78953825 (-)
C3H/HeJ	ENSMUSG00175053232	lncRNA gene	Chr15:79264041-79264790 (-)
C57BL/6NJ	ENSMUSG00215053191	lncRNA gene	Chr15:79047663-79048412 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047945	lncRNA gene	Chr15:78569242-78569991 (-)
CBA/J	ENSMUSG00210049526	lncRNA gene	Chr15:79039139-79039888 (-)
DBA/2J	ENSMUSG00185051393	lncRNA gene	Chr15:79062345-79063094 (-)
FVB/NJ	ENSMUSG00205051470	lncRNA gene	Chr15:78790695-78791444 (-)
JF1/MsJ	ENSUMUG00000056535	lncRNA gene	Chr15:78639045-78639794 (-)
LP/J	ENSMUSG00230045101	lncRNA gene	Chr15:82384902-82385651 (-)
NOD/ShiLtJ	ENSMUSG00190053786	lncRNA gene	Chr15:79056235-79056984 (-)
NZO/HlLtJ	ENSMUSG00225050729	lncRNA gene	Chr15:82723440-82724189 (-)
PWK/PhJ	ENSLUMG00010052801	lncRNA gene	Chr15:78850598-78851348 (-)
SPRET/EiJ	ENSMSPG00010051559	lncRNA gene	Chr15:80494719-80495467 (-)
WSB/EiJ	ENSIUOG00005049913	lncRNA gene	Chr15:79129848-79130597 (-)

Homology

• Gene Tree
  Gm56711
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120783 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120783	Ensembl Gene Model | MGI Sequence Detail	1839	C57BL/6J
transcript	ENSMUST00000245787	Ensembl | MGI Sequence Detail	1839	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56711:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135530	Chr15:82031712-82031724 (-)	41 bp
Tssr135529	Chr15:82031692-82031701 (-)	62 bp
Tssr135528	Chr15:82031243-82031260 (-)	507 bp
Tssr135527	Chr15:82030990-82031020 (-)	754 bp