Gm56708 Gene Detail

Summary

• Symbol
  Gm56708
• Name
  predicted gene, 56708

• Feature Type
  lncRNA gene
• IDs
  MGI:7337330
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr15:96606934-96625837 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  561 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337330	lncRNA gene	Chr15:96606934-96625837 (+)
129S1/SvImJ	ENSMUSG00200052970	lncRNA gene	Chr15:93802631-93803023 (+)
A/J	ENSMUSG00195047146	lncRNA gene	Chr15:93656586-93656978 (+)
AKR/J	ENSMUSG00220049868	lncRNA gene	Chr15:93654178-93654570 (+)
BALB/cJ	ENSMUSG00180048321	lncRNA gene	Chr15:93580237-93580629 (+)
C3H/HeJ	ENSMUSG00175047805	lncRNA gene	Chr15:93836858-93837250 (+)
C57BL/6NJ	ENSMUSG00215052108	lncRNA gene	Chr15:93643138-93643530 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047146	lncRNA gene	Chr15:93119783-93120175 (+)
CBA/J	ENSMUSG00210031556	lncRNA gene	Chr15:93614077-93614469 (+)
DBA/2J	ENSMUSG00185041722	lncRNA gene	Chr15:93664316-93664708 (+)
FVB/NJ	ENSMUSG00205047717	lncRNA gene	Chr15:93383409-93383801 (+)
JF1/MsJ	ENSUMUG00000057139	lncRNA gene	Chr15:93163418-93163806 (+)
LP/J	ENSMUSG00230040704	lncRNA gene	Chr15:96982268-96982660 (+)
NOD/ShiLtJ	ENSMUSG00190048515	lncRNA gene	Chr15:93674427-93674819 (+)
NZO/HlLtJ	ENSMUSG00225043868	lncRNA gene	Chr15:97282537-97282929 (+)
PWK/PhJ	ENSLUMG00010050370	lncRNA gene	Chr15:93319984-93320376 (+)
SPRET/EiJ	ENSMSPG00010049590	lncRNA gene	Chr15:95145283-95145676 (+)
WSB/EiJ	ENSIUOG00005039610	lncRNA gene	Chr15:93733772-93734164 (+)

Homology

• Gene Tree
  Gm56708
  

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000120767 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120767	Ensembl Gene Model | MGI Sequence Detail	18904	C57BL/6J
transcript	ENSMUST00000356514	Ensembl | MGI Sequence Detail	1153	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56708:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132846	Chr15:96607770-96607814 (+)	858 bp
Tssr132847	Chr15:96607837-96607852 (+)	911 bp
Tssr132848	Chr15:96607897-96607909 (+)	969 bp
Tssr132849	Chr15:96608252-96608257 (+)	1,321 bp