Gm56701 Gene Detail

Summary

• Symbol
  Gm56701
• Name
  predicted gene, 56701

• Feature Type
  lncRNA gene
• IDs
  MGI:7337316
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:34025132-34060437 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1267 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337316	lncRNA gene	Chr15:34025132-34060437 (+)
129S1/SvImJ	ENSMUSG00200028345	lncRNA gene	Chr15:31044510-31051023 (+)
A/J	ENSMUSG00195037500	lncRNA gene	Chr15:30973753-30980840 (+)
AKR/J	ENSMUSG00220030504	lncRNA gene	Chr15:30876571-30883656 (+)
BALB/cJ	ENSMUSG00180033207	lncRNA gene	Chr15:30930397-30937489 (+)
C3H/HeJ	ENSMUSG00175027239	lncRNA gene	Chr15:31117371-31123904 (+)
C57BL/6NJ	ENSMUSG00215020295	lncRNA gene	Chr15:30962665-30969198 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011284	lncRNA gene	Chr15:30994973-31001590 (+)
CBA/J	ENSMUSG00210018136	lncRNA gene	Chr15:31068025-31074558 (+)
DBA/2J	ENSMUSG00185034695	lncRNA gene	Chr15:31052751-31059286 (+)
FVB/NJ	ENSMUSG00205031886	lncRNA gene	Chr15:30931577-30938662 (+)
JF1/MsJ	ENSUMUG00000036079	lncRNA gene	Chr15:30963578-30970097 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190031417	lncRNA gene	Chr15:31008260-31014757 (+)
NZO/HlLtJ	ENSMUSG00225032240	lncRNA gene	Chr15:34744248-34750781 (+)
PWK/PhJ	ENSLUMG00010034098	lncRNA gene	Chr15:31107207-31113736 (+)
SPRET/EiJ	ENSMSPG00010013319	lncRNA gene	Chr15:31717849-31724198 (+)
WSB/EiJ	ENSIUOG00005032527	lncRNA gene	Chr15:31069845-31076390 (+)

Homology

• Gene Tree
  Gm56701
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120494 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120494	Ensembl Gene Model | MGI Sequence Detail	35306	C57BL/6J
transcript	ENSMUST00000243713	Ensembl | MGI Sequence Detail	1176	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56701:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131003	Chr15:34050565-34050589 (+)	25,445 bp
Tssr131004	Chr15:34053898-34053907 (+)	28,771 bp