Gm56700 Gene Detail

Summary

• Symbol
  Gm56700
• Name
  predicted gene, 56700

• Feature Type
  lncRNA gene
• IDs
  MGI:7337314
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:97365096-97369759 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  232 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337314	lncRNA gene	Chr15:97365096-97369759 (+)
129S1/SvImJ	ENSMUSG00200052432	lncRNA gene	Chr15:94561982-94565130 (+)
A/J	ENSMUSG00195045261	lncRNA gene	Chr15:94401794-94404954 (+)
AKR/J	ENSMUSG00220049600	lncRNA gene	Chr15:94413462-94416629 (+)
BALB/cJ	ENSMUSG00180048121	lncRNA gene	Chr15:94338850-94342012 (+)
C3H/HeJ	ENSMUSG00175046224	lncRNA gene	Chr15:94582022-94585181 (+)
C57BL/6NJ	ENSMUSG00215051383	lncRNA gene	Chr15:94401762-94404925 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047452	lncRNA gene	Chr15:93872360-93875506 (+)
CBA/J	ENSMUSG00210033355	lncRNA gene	Chr15:94373254-94376417 (+)
DBA/2J	ENSMUSG00185043772	lncRNA gene	Chr15:94425048-94428196 (+)
FVB/NJ	ENSMUSG00205046842	lncRNA gene	Chr15:94142309-94145470 (+)
JF1/MsJ	ENSUMUG00000057277	lncRNA gene	Chr15:93925323-93928414 (+)
LP/J	ENSMUSG00230040646	lncRNA gene	Chr15:97743084-97746248 (+)
NOD/ShiLtJ	ENSMUSG00190048707	lncRNA gene	Chr15:94419731-94422889 (+)
NZO/HlLtJ	ENSMUSG00225043820	lncRNA gene	Chr15:98041248-98044417 (+)
PWK/PhJ	ENSLUMG00010050668	lncRNA gene	Chr15:94068418-94071580 (+)
SPRET/EiJ	ENSMSPG00010049678	lncRNA gene	Chr15:95886781-95888567 (+)
WSB/EiJ	ENSIUOG00005041129	lncRNA gene	Chr15:94482799-94485979 (+)

Homology

• Gene Tree
  Gm56700
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120469 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120469	Ensembl Gene Model | MGI Sequence Detail	4664	C57BL/6J
transcript	ENSMUST00000243552	Ensembl | MGI Sequence Detail	1677	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56700:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132874	Chr15:97365098-97365102 (+)	4 bp
Tssr132875	Chr15:97369620-97369629 (+)	4,529 bp