Gm56699 Gene Detail

Summary

• Symbol
  Gm56699
• Name
  predicted gene, 56699

• Feature Type
  lncRNA gene
• IDs
  MGI:7337312
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:38710899-38711791 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337312	lncRNA gene	Chr15:38710899-38711791 (+)
129S1/SvImJ	ENSMUSG00200027467	lncRNA gene	Chr15:35713260-35713910 (+)
A/J	ENSMUSG00195036343	lncRNA gene	Chr15:35637555-35638205 (+)
AKR/J	ENSMUSG00220029585	lncRNA gene	Chr15:35551437-35552087 (+)
BALB/cJ	ENSMUSG00180033566	lncRNA gene	Chr15:35618139-35618789 (+)
C3H/HeJ	ENSMUSG00175029517	lncRNA gene	Chr15:35813761-35814411 (+)
C57BL/6NJ	ENSMUSG00215024853	lncRNA gene	Chr15:35624613-35625263 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010972	lncRNA gene	Chr15:35633919-35634569 (+)
CBA/J	ENSMUSG00210018127	lncRNA gene	Chr15:35731166-35731816 (+)
DBA/2J	ENSMUSG00185036608	lncRNA gene	Chr15:35712009-35712659 (+)
FVB/NJ	ENSMUSG00205033529	lncRNA gene	Chr15:35603945-35604595 (+)
JF1/MsJ	ENSUMUG00000037027	lncRNA gene	Chr15:35611442-35612092 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190031166	lncRNA gene	Chr15:35678654-35679304 (+)
NZO/HlLtJ	ENSMUSG00225031837	lncRNA gene	Chr15:39399852-39400502 (+)
PWK/PhJ	ENSLUMG00010032895	lncRNA gene	Chr15:35762042-35762692 (+)
SPRET/EiJ	ENSMSPG00010013872	lncRNA gene	Chr15:36416592-36417242 (+)
WSB/EiJ	ENSIUOG00005032889	lncRNA gene	Chr15:35727633-35728283 (+)

Homology

• Gene Tree
  Gm56699
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120411 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120411	Ensembl Gene Model | MGI Sequence Detail	893	C57BL/6J
transcript	ENSMUST00000243148	Ensembl | MGI Sequence Detail	758	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56699:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4584	Chr15:38710934-38710974 (+)	55 bp