Gm56697 Gene Detail

Summary

• Symbol
  Gm56697
• Name
  predicted gene, 56697

• Feature Type
  lncRNA gene
• IDs
  MGI:7337308
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr15:59517539-59521471 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337308	lncRNA gene	Chr15:59517539-59521471 (-)
129S1/SvImJ	ENSMUSG00200029106	lncRNA gene	Chr15:56502779-56503763 (-)
A/J	ENSMUSG00195006215	lncRNA gene	Chr15:56569483-56570468 (-)
AKR/J	ENSMUSG00220021933	lncRNA gene	Chr15:56543852-56544836 (-)
BALB/cJ	ENSMUSG00180009274	lncRNA gene	Chr15:56501308-56502291 (-)
C3H/HeJ	ENSMUSG00175005271	lncRNA gene	Chr15:56761155-56762136 (-)
C57BL/6NJ	ENSMUSG00215013569	lncRNA gene	Chr15:56486499-56487484 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007023	lncRNA gene	Chr15:56376727-56377713 (-)
CBA/J	ENSMUSG00210007141	lncRNA gene	Chr15:56589280-56590262 (-)
DBA/2J	ENSMUSG00185028096	lncRNA gene	Chr15:56544119-56545104 (-)
FVB/NJ	ENSMUSG00205006813	lncRNA gene	Chr15:56324970-56325955 (-)
JF1/MsJ	ENSUMUG00000041312	lncRNA gene	Chr15:56346447-56347434 (-)
LP/J	ENSMUSG00230008333	lncRNA gene	Chr15:59846363-59847346 (-)
NOD/ShiLtJ	ENSMUSG00190017778	lncRNA gene	Chr15:56566292-56567275 (-)
NZO/HlLtJ	ENSMUSG00225028671	lncRNA gene	Chr15:60179305-60180289 (-)
PWK/PhJ	ENSLUMG00010028741	lncRNA gene	Chr15:56629573-56630560 (-)
SPRET/EiJ	ENSMSPG00010025390	lncRNA gene	Chr15:57813905-57814906 (-)
WSB/EiJ	ENSIUOG00005006329	lncRNA gene	Chr15:56592570-56593553 (-)

Homology

• Gene Tree
  Gm56697
  

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000120225 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120225	Ensembl Gene Model | MGI Sequence Detail	3933	C57BL/6J
transcript	ENSMUST00000241974	Ensembl | MGI Sequence Detail	1770	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56697:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134446	Chr15:59522452-59522463 (-)	-987 bp
Tssr4603	Chr15:59522119-59522126 (-)	-652 bp
Tssr134445	Chr15:59519991-59520017 (-)	1,467 bp
Tssr134444	Chr15:59519944-59519985 (-)	1,506 bp
Tssr134443	Chr15:59518203-59518207 (-)	3,266 bp