Gm56688 Gene Detail

Summary

• Symbol
  Gm56688
• Name
  predicted gene, 56688

• Feature Type
  lncRNA gene
• IDs
  MGI:7337290
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:165293094-165294014 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337290	lncRNA gene	ChrX:165293094-165294014 (+)
129S1/SvImJ	ENSMUSG00200027531	lncRNA gene	ChrX:142021327-142022179 (+)
A/J	ENSMUSG00195016766	lncRNA gene	ChrX:147145225-147146077 (+)
AKR/J	ENSMUSG00220032069	lncRNA gene	ChrX:139028327-139029179 (+)
BALB/cJ	ENSMUSG00180041842	lncRNA gene	ChrX:142531745-142532597 (+)
C3H/HeJ	ENSMUSG00175010621	lncRNA gene	ChrX:147078481-147079333 (+)
C57BL/6NJ	ENSMUSG00215017594	lncRNA gene	ChrX:142912946-142913798 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024321	lncRNA gene	ChrX:144621652-144622504 (+)
CBA/J	ENSMUSG00210030139	lncRNA gene	ChrX:144492115-144492967 (+)
DBA/2J	ENSMUSG00185031200	lncRNA gene	ChrX:159346075-159346927 (+)
FVB/NJ	ENSMUSG00205002810	lncRNA gene	ChrX:143002390-143003242 (+)
JF1/MsJ	ENSUMUG00000037532	lncRNA gene	ChrX:179728339-179729191 (+)
LP/J	ENSMUSG00230026989	lncRNA gene	ChrX:166138141-166138993 (+)
NOD/ShiLtJ	ENSMUSG00190022276	lncRNA gene	ChrX:143526135-143526987 (+)
NZO/HlLtJ	ENSMUSG00225038755	lncRNA gene	ChrX:169535752-169536604 (+)
PWK/PhJ	ENSLUMG00010043876	lncRNA gene	ChrX:140806698-140807550 (+)
SPRET/EiJ	ENSMSPG00010026569	lncRNA gene	ChrX:146113331-146114185 (+)
WSB/EiJ	ENSIUOG00005011092	lncRNA gene	ChrX:143965744-143966596 (+)

Homology

• Gene Tree
  Gm56688
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  9
• Gene trapped
  9
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120664 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120664	Ensembl Gene Model | MGI Sequence Detail	921	C57BL/6J
transcript	ENSMUST00000245000	Ensembl | MGI Sequence Detail	921	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56688:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162684	ChrX:165293179-165293219 (+)	105 bp