Gm56687 Gene Detail

Summary

• Symbol
  Gm56687
• Name
  predicted gene, 56687

• Feature Type
  lncRNA gene
• IDs
  MGI:7337288
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:100571185-100571452 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337288	lncRNA gene	ChrX:100571185-100571452 (+)
129S1/SvImJ	ENSMUSG00200038465	lncRNA gene	ChrX:82284584-82284828 (+)
A/J	ENSMUSG00195040585	lncRNA gene	ChrX:86039381-86039625 (+)
AKR/J	ENSMUSG00220029625	lncRNA gene	ChrX:80730076-80730320 (+)
BALB/cJ	ENSMUSG00180045330	lncRNA gene	ChrX:82749752-82749996 (+)
C3H/HeJ	ENSMUSG00175045223	lncRNA gene	ChrX:86410137-86410381 (+)
C57BL/6NJ	ENSMUSG00215047918	lncRNA gene	ChrX:82940370-82940614 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042728	lncRNA gene	ChrX:83786058-83786300 (+)
CBA/J	ENSMUSG00210045999	lncRNA gene	ChrX:83180982-83181226 (+)
DBA/2J	ENSMUSG00185046343	lncRNA gene	ChrX:95624035-95624279 (+)
FVB/NJ	ENSMUSG00205040579	lncRNA gene	ChrX:82438640-82438884 (+)
JF1/MsJ	ENSUMUG00000042210	lncRNA gene	ChrX:116203970-116204214 (+)
LP/J	ENSMUSG00230043940	lncRNA gene	ChrX:102318119-102318363 (+)
NOD/ShiLtJ	ENSMUSG00190042176	lncRNA gene	ChrX:82335883-82336127 (+)
NZO/HlLtJ	ENSMUSG00225046429	lncRNA gene	ChrX:107406073-107406318 (+)
PWK/PhJ	ENSLUMG00010040892	lncRNA gene	ChrX:81478496-81478740 (+)
SPRET/EiJ	ENSMSPG00010040064	lncRNA gene	ChrX:85785796-85786039 (+)
WSB/EiJ	ENSIUOG00005043559	lncRNA gene	ChrX:82862787-82863032 (+)

Homology

• Gene Tree
  Gm56687
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120836 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120836	Ensembl Gene Model | MGI Sequence Detail	268	C57BL/6J
transcript	ENSMUST00000246033	Ensembl | MGI Sequence Detail	268	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56687:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161677	ChrX:100571189-100571226 (+)	23 bp