Gm56686 Gene Detail

Summary

• Symbol
  Gm56686
• Name
  predicted gene, 56686

• Feature Type
  lncRNA gene
• IDs
  MGI:7337286
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:162741265-162756073 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  474 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337286	lncRNA gene	ChrX:162741265-162756073 (+)
129S1/SvImJ	ENSMUSG00200027350	lncRNA gene	ChrX:139469377-139483706 (+)
A/J	ENSMUSG00195016370	lncRNA gene	ChrX:144589910-144604235 (+)
AKR/J	ENSMUSG00220032630	lncRNA gene	ChrX:136467574-136482005 (+)
BALB/cJ	ENSMUSG00180041119	lncRNA gene	ChrX:139978477-139992908 (+)
C3H/HeJ	ENSMUSG00175010642	lncRNA gene	ChrX:144525440-144539761 (+)
C57BL/6NJ	ENSMUSG00215028548	lncRNA gene	ChrX:140359857-140374182 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024494	lncRNA gene	ChrX:142082300-142096990 (+)
CBA/J	ENSMUSG00210029653	lncRNA gene	ChrX:141867687-141882014 (+)
DBA/2J	ENSMUSG00185030517	lncRNA gene	ChrX:156796347-156810674 (+)
FVB/NJ	ENSMUSG00205034068	lncRNA gene	ChrX:140453514-140467839 (+)
JF1/MsJ	ENSUMUG00000037840	lncRNA gene	ChrX:177206704-177222222 (+)
LP/J	ENSMUSG00230026514	lncRNA gene	ChrX:163586297-163600626 (+)
NOD/ShiLtJ	ENSMUSG00190035336	lncRNA gene	ChrX:140972384-140986711 (+)
NZO/HlLtJ	ENSMUSG00225038986	lncRNA gene	ChrX:166974834-166989159 (+)
PWK/PhJ	ENSLUMG00010042300	lncRNA gene	ChrX:138282657-138298283 (+)
SPRET/EiJ	ENSMSPG00010020229	lncRNA gene	ChrX:143495736-143516828 (+)
WSB/EiJ	ENSIUOG00005025878	lncRNA gene	ChrX:141408460-141422901 (+)

Homology

• Gene Tree
  Gm56686
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120789 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120789	Ensembl Gene Model | MGI Sequence Detail	14809	C57BL/6J
transcript	ENSMUST00000245819	Ensembl | MGI Sequence Detail	1536	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56686:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162604	ChrX:162741235-162741308 (+)	7 bp
Tssr162605	ChrX:162741740-162741793 (+)	502 bp