Gm56685 Gene Detail

Summary

• Symbol
  Gm56685
• Name
  predicted gene, 56685

• Feature Type
  lncRNA gene
• IDs
  MGI:7337284
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:58224619-58236966 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  341 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337284	lncRNA gene	ChrX:58224619-58236966 (+)
129S1/SvImJ	ENSMUSG00200038235	lncRNA gene	ChrX:40475221-40487230 (+)
A/J	ENSMUSG00195009856	lncRNA gene	ChrX:43993228-44005245 (+)
AKR/J	ENSMUSG00220041066	lncRNA gene	ChrX:39878664-39890675 (+)
BALB/cJ	ENSMUSG00180035949	lncRNA gene	ChrX:40624858-40636879 (+)
C3H/HeJ	ENSMUSG00175009214	lncRNA gene	ChrX:44175336-44187353 (+)
C57BL/6NJ	ENSMUSG00215048280	lncRNA gene	ChrX:40775314-40787327 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019717	lncRNA gene	ChrX:42405584-42417600 (+)
CBA/J	ENSMUSG00210018824	lncRNA gene	ChrX:40982592-40994599 (+)
DBA/2J	ENSMUSG00185035921	lncRNA gene	ChrX:53268938-53280947 (+)
FVB/NJ	ENSMUSG00205009042	lncRNA gene	ChrX:40612588-40624599 (+)
JF1/MsJ	ENSUMUG00000027163	lncRNA gene	ChrX:74165744-74177778 (+)
LP/J	ENSMUSG00230030620	lncRNA gene	ChrX:59825840-59837849 (+)
NOD/ShiLtJ	ENSMUSG00190037144	lncRNA gene	ChrX:40267493-40279502 (+)
NZO/HlLtJ	ENSMUSG00225032684	lncRNA gene	ChrX:65071297-65083306 (+)
PWK/PhJ	ENSLUMG00010042031	lncRNA gene	ChrX:40102679-40114625 (+)
SPRET/EiJ	ENSMSPG00010004599	lncRNA gene	ChrX:42800244-42812253 (+)
WSB/EiJ	ENSIUOG00005012050	lncRNA gene	ChrX:41282954-41294979 (+)

Homology

• Gene Tree
  Gm56685
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120929 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120929	Ensembl Gene Model | MGI Sequence Detail	12348	C57BL/6J
transcript	ENSMUST00000246536	Ensembl | MGI Sequence Detail	1103	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56685:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161063	ChrX:58224973-58224997 (+)	366 bp