Gm56684 Gene Detail

Summary

• Symbol
  Gm56684
• Name
  predicted gene, 56684

• Feature Type
  lncRNA gene
• IDs
  MGI:7337282
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:148930547-148958496 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  703 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337282	lncRNA gene	ChrX:148930547-148958496 (+)
129S1/SvImJ	ENSMUSG00200033914	lncRNA gene	ChrX:125719897-125747861 (+)
A/J	ENSMUSG00195021552	lncRNA gene	ChrX:130730047-130757983 (+)
AKR/J	ENSMUSG00220036779	lncRNA gene	ChrX:122734391-122762352 (+)
BALB/cJ	ENSMUSG00180041515	lncRNA gene	ChrX:126122335-126150283 (+)
C3H/HeJ	ENSMUSG00175030403	lncRNA gene	ChrX:130644855-130672818 (+)
C57BL/6NJ	ENSMUSG00215030787	lncRNA gene	ChrX:126408471-126436431 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037671	lncRNA gene	ChrX:128449112-128476985 (+)
CBA/J	ENSMUSG00210034154	lncRNA gene	ChrX:128122221-128150184 (+)
DBA/2J	ENSMUSG00185046734	lncRNA gene	ChrX:142943657-142971620 (+)
FVB/NJ	ENSMUSG00205030664	lncRNA gene	ChrX:126650678-126685045 (+)
JF1/MsJ	ENSUMUG00000044519	lncRNA gene	ChrX:163150650-163185109 (+)
JF1/MsJ	ENSUMUG00000044460	lncRNA gene	ChrX:162286608-162321126 (+)
JF1/MsJ	ENSUMUG00000044491	lncRNA gene	ChrX:162677892-162712411 (+)
JF1/MsJ	ENSUMUG00000044615	lncRNA gene	ChrX:162805151-162839828 (+)
LP/J	ENSMUSG00230032580	lncRNA gene	ChrX:149739448-149767405 (+)
NOD/ShiLtJ	ENSMUSG00190039157	lncRNA gene	ChrX:127239164-127267116 (+)
NZO/HlLtJ	ENSMUSG00225042304	lncRNA gene	ChrX:153242973-153270921 (+)
PWK/PhJ	ENSLUMG00010034552	lncRNA gene	ChrX:124692874-124721230 (+)
SPRET/EiJ	ENSMSPG00010042441	lncRNA gene	ChrX:129535286-129544197 (+)
WSB/EiJ	ENSIUOG00005039752	lncRNA gene	ChrX:127713370-127741295 (+)

Homology

• Gene Tree
  Gm56684
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120865 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120865	Ensembl Gene Model | MGI Sequence Detail	27950	C57BL/6J
transcript	ENSMUST00000246198	Ensembl | MGI Sequence Detail	1106	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56684:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162302	ChrX:148930488-148930499 (+)	-53 bp