Gm56683 Gene Detail

Summary

• Symbol
  Gm56683
• Name
  predicted gene, 56683

• Feature Type
  lncRNA gene
• IDs
  MGI:7337280
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:8118985-8119776 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337280	lncRNA gene	ChrX:8118985-8119776 (+)
129S1/SvImJ	ENSMUSG00200034347	lncRNA gene	ChrX:2820425-2821166 (+)
A/J	ENSMUSG00195042265	lncRNA gene	ChrX:2843308-2844074 (+)
AKR/J	ENSMUSG00220035229	lncRNA gene	ChrX:2831131-2831892 (+)
BALB/cJ	ENSMUSG00180029998	lncRNA gene	ChrX:2841107-2841872 (+)
C3H/HeJ	ENSMUSG00175035941	lncRNA gene	ChrX:2854997-2855762 (+)
C57BL/6NJ	ENSMUSG00215041843	lncRNA gene	ChrX:3518809-3519574 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034701	lncRNA gene	ChrX:2789988-2790767 (+)
CBA/J	ENSMUSG00210038905	lncRNA gene	ChrX:2871867-2872632 (+)
DBA/2J	ENSMUSG00185029839	lncRNA gene	ChrX:9488994-9489759 (+)
FVB/NJ	ENSMUSG00205037449	lncRNA gene	ChrX:2865820-2866585 (+)
JF1/MsJ	ENSUMUG00000043280	lncRNA gene	ChrX:23382370-23383153 (+)
LP/J	ENSMUSG00230033804	lncRNA gene	ChrX:14009219-14009964 (+)
NOD/ShiLtJ	ENSMUSG00190041751	lncRNA gene	ChrX:2845900-2846665 (+)
NZO/HlLtJ	ENSMUSG00225046193	lncRNA gene	ChrX:19274904-19275669 (+)
PWK/PhJ	ENSLUMG00010035174	lncRNA gene	ChrX:2838210-2839013 (+)
SPRET/EiJ	ENSMSPG00010026614	lncRNA gene	ChrX:2876852-2877627 (+)
WSB/EiJ	ENSIUOG00005034567	lncRNA gene	ChrX:15682226-15682979 (-)

Homology

• Gene Tree
  Gm56683
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120775 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120775	Ensembl Gene Model | MGI Sequence Detail	792	C57BL/6J
transcript	ENSMUST00000245758	Ensembl | MGI Sequence Detail	792	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56683:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160491	ChrX:8118997-8119032 (+)	30 bp