Gm56681 Gene Detail

Summary

• Symbol
  Gm56681
• Name
  predicted gene, 56681

• Feature Type
  lncRNA gene
• IDs
  MGI:7337276
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:81858347-81951948 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1807 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337276	lncRNA gene	ChrX:81858347-81951948 (+)
129S1/SvImJ	ENSMUSG00200032854	lncRNA gene	ChrX:63833556-63834886 (+)
A/J	ENSMUSG00195041534	lncRNA gene	ChrX:67556326-67557656 (+)
AKR/J	ENSMUSG00220028876	lncRNA gene	ChrX:62452450-62453780 (+)
BALB/cJ	ENSMUSG00180025306	lncRNA gene	ChrX:64127610-64128940 (+)
C3H/HeJ	ENSMUSG00175031936	lncRNA gene	ChrX:67730896-67732226 (+)
C57BL/6NJ	ENSMUSG00215017880	lncRNA gene	ChrX:64284763-64286093 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039006	lncRNA gene	ChrX:65371709-65373039 (+)
CBA/J	ENSMUSG00210025710	lncRNA gene	ChrX:64451299-64452629 (+)
DBA/2J	ENSMUSG00185039011	lncRNA gene	ChrX:76807573-76808903 (+)
FVB/NJ	ENSMUSG00205019452	lncRNA gene	ChrX:63746346-63747676 (+)
JF1/MsJ	ENSUMUG00000028796	lncRNA gene	ChrX:97515199-97516529 (+)
LP/J	ENSMUSG00230010209	lncRNA gene	ChrX:83453150-83454480 (+)
NOD/ShiLtJ	ENSMUSG00190025902	lncRNA gene	ChrX:63769042-63770372 (+)
NZO/HlLtJ	ENSMUSG00225048263	lncRNA gene	ChrX:88602679-88604009 (+)
PWK/PhJ	ENSLUMG00010034192	lncRNA gene	ChrX:63258831-63260161 (+)
SPRET/EiJ	ENSMSPG00010023669	lncRNA gene	ChrX:66899186-66900516 (+)
WSB/EiJ	ENSIUOG00005043222	lncRNA gene	ChrX:64359431-64360761 (+)

Homology

• Gene Tree
  Gm56681
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120533 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120533	Ensembl Gene Model | MGI Sequence Detail	93602	C57BL/6J
transcript	ENSMUST00000244034	Ensembl | MGI Sequence Detail	1331	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56681:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161393	ChrX:81858351-81858364 (+)	11 bp
Tssr161394	ChrX:81858492-81858526 (+)	162 bp