Gm56680 Gene Detail

Summary

• Symbol
  Gm56680
• Name
  predicted gene, 56680

• Feature Type
  lncRNA gene
• IDs
  MGI:7337274
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:84819586-84901839 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1805 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337274	lncRNA gene	ChrX:84819586-84901839 (+)
129S1/SvImJ	ENSMUSG00200032329	lncRNA gene	ChrX:66833524-66834381 (+)
A/J	ENSMUSG00195042205	lncRNA gene	ChrX:70554724-70555581 (+)
AKR/J	ENSMUSG00220029249	lncRNA gene	ChrX:65442591-65443448 (+)
BALB/cJ	ENSMUSG00180025195	lncRNA gene	ChrX:67100272-67101129 (+)
C3H/HeJ	ENSMUSG00175031282	lncRNA gene	ChrX:70722214-70723071 (+)
C57BL/6NJ	ENSMUSG00215018481	lncRNA gene	ChrX:67249053-67249910 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038887	lncRNA gene	ChrX:68295938-68296795 (+)
CBA/J	ENSMUSG00210025551	lncRNA gene	ChrX:67444570-67445427 (+)
DBA/2J	ENSMUSG00185038061	lncRNA gene	ChrX:79793395-79794252 (+)
FVB/NJ	ENSMUSG00205019585	lncRNA gene	ChrX:66734003-66734860 (+)
JF1/MsJ	ENSUMUG00000027561	lncRNA gene	ChrX:100501729-100502586 (+)
LP/J	ENSMUSG00230010603	lncRNA gene	ChrX:86440340-86441197 (+)
NOD/ShiLtJ	ENSMUSG00190025575	lncRNA gene	ChrX:66742268-66743125 (+)
NZO/HlLtJ	ENSMUSG00225046141	lncRNA gene	ChrX:91566524-91567381 (+)
PWK/PhJ	ENSLUMG00010033810	lncRNA gene	ChrX:66224436-66225293 (+)
SPRET/EiJ	ENSMSPG00010022811	lncRNA gene	ChrX:69936921-69937778 (+)
WSB/EiJ	ENSIUOG00005042518	lncRNA gene	ChrX:67331411-67332268 (+)

Homology

• Gene Tree
  Gm56680
  

Sequences &
Gene Models

• All Sequences
  44

• Ensembl
  ENSMUSG00000120242 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120242	Ensembl Gene Model | MGI Sequence Detail	82254	C57BL/6J
transcript	ENSMUST00000292921	Ensembl | MGI Sequence Detail	2530	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56680:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161443	ChrX:84820540-84820564 (+)	966 bp
Tssr161444	ChrX:84820616-84820626 (+)	1,035 bp