Gm56679 Gene Detail

Summary

• Symbol
  Gm56679
• Name
  predicted gene, 56679

• Feature Type
  lncRNA gene
• IDs
  MGI:7337272
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:100375624-100376151 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337272	lncRNA gene	ChrX:100375624-100376151 (-)
129S1/SvImJ	ENSMUSG00200038661	lncRNA gene	ChrX:82089088-82089508 (-)
A/J	ENSMUSG00195043254	lncRNA gene	ChrX:85843880-85844300 (-)
AKR/J	ENSMUSG00220030740	lncRNA gene	ChrX:80534579-80534999 (-)
BALB/cJ	ENSMUSG00180043700	lncRNA gene	ChrX:82554248-82554668 (-)
C3H/HeJ	ENSMUSG00175045480	lncRNA gene	ChrX:86214668-86215088 (-)
C57BL/6NJ	ENSMUSG00215046238	lncRNA gene	ChrX:82744855-82745275 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043184	lncRNA gene	ChrX:83593621-83594041 (-)
CBA/J	ENSMUSG00210047100	lncRNA gene	ChrX:82985514-82985934 (-)
DBA/2J	ENSMUSG00185045483	lncRNA gene	ChrX:95428558-95428978 (-)
FVB/NJ	ENSMUSG00205036870	lncRNA gene	ChrX:82243138-82243558 (-)
JF1/MsJ	ENSUMUG00000037655	lncRNA gene	ChrX:116010184-116010611 (-)
LP/J	ENSMUSG00230043893	lncRNA gene	ChrX:102122630-102123050 (-)
NOD/ShiLtJ	ENSMUSG00190040765	lncRNA gene	ChrX:82140389-82140809 (-)
NZO/HlLtJ	ENSMUSG00225046365	lncRNA gene	ChrX:107216817-107217237 (-)
PWK/PhJ	ENSLUMG00010039042	lncRNA gene	ChrX:81283316-81283736 (-)
SPRET/EiJ	ENSMSPG00010040669	lncRNA gene	ChrX:85590714-85591137 (-)
WSB/EiJ	ENSIUOG00005044359	lncRNA gene	ChrX:82676262-82676682 (-)

Homology

• Gene Tree
  Gm56679
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120504 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120504	Ensembl Gene Model | MGI Sequence Detail	528	C57BL/6J
transcript	ENSMUST00000243819	Ensembl | MGI Sequence Detail	528	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56679:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163883	ChrX:100376109-100376155 (-)	19 bp