Gm56678 Gene Detail

Summary

• Symbol
  Gm56678
• Name
  predicted gene, 56678

• Feature Type
  lncRNA gene
• IDs
  MGI:7337270
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:165984546-165987035 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337270	lncRNA gene	ChrX:165984546-165987035 (+)
129S1/SvImJ	ENSMUSG00200014174	lncRNA gene	ChrX:142723558-142726025 (+)
A/J	ENSMUSG00195016575	lncRNA gene	ChrX:147845578-147848046 (+)
AKR/J	ENSMUSG00220033126	lncRNA gene	ChrX:139727792-139730261 (+)
BALB/cJ	ENSMUSG00180017934	lncRNA gene	ChrX:143232078-143234543 (+)
C3H/HeJ	ENSMUSG00175010511	lncRNA gene	ChrX:147778787-147781252 (+)
C57BL/6NJ	ENSMUSG00215017679	lncRNA gene	ChrX:143604726-143607188 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024445	lncRNA gene	ChrX:145317131-145319539 (+)
CBA/J	ENSMUSG00210029548	lncRNA gene	ChrX:145192400-145194867 (+)
DBA/2J	ENSMUSG00185030815	lncRNA gene	ChrX:160046364-160048830 (+)
FVB/NJ	ENSMUSG00205002729	lncRNA gene	ChrX:143702359-143704826 (+)
JF1/MsJ	ENSUMUG00000038989	lncRNA gene	ChrX:180444234-180446719 (+)
LP/J	ENSMUSG00230027132	lncRNA gene	ChrX:166838283-166840748 (+)
NOD/ShiLtJ	ENSMUSG00190021853	lncRNA gene	ChrX:144211108-144213528 (+)
NZO/HlLtJ	ENSMUSG00225038805	lncRNA gene	ChrX:170227329-170229758 (+)
PWK/PhJ	ENSLUMG00010043804	lncRNA gene	ChrX:141514488-141516974 (+)
SPRET/EiJ	ENSMSPG00010026850	lncRNA gene	ChrX:146843922-146846367 (+)
WSB/EiJ	ENSIUOG00005011190	lncRNA gene	ChrX:144665006-144667444 (+)

Homology

• Gene Tree
  Gm56678
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120251 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120251	Ensembl Gene Model | MGI Sequence Detail	2490	C57BL/6J
transcript	ENSMUST00000242103	Ensembl | MGI Sequence Detail	1259	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56678:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162689	ChrX:165984580-165984616 (+)	52 bp