Gm56677 Gene Detail

Summary

• Symbol
  Gm56677
• Name
  predicted gene, 56677

• Feature Type
  lncRNA gene
• IDs
  MGI:7337268
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:73009915-73010775 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337268	lncRNA gene	ChrX:73009915-73010775 (+)
129S1/SvImJ	ENSMUSG00200043448	lncRNA gene	ChrX:55070672-55071259 (+)
A/J	ENSMUSG00195036931	lncRNA gene	ChrX:58746903-58747490 (+)
AKR/J	ENSMUSG00220047078	lncRNA gene	ChrX:54049213-54049800 (+)
BALB/cJ	ENSMUSG00180050619	lncRNA gene	ChrX:55327646-55328233 (+)
C3H/HeJ	ENSMUSG00175037417	lncRNA gene	ChrX:58911287-58911874 (+)
C57BL/6NJ	ENSMUSG00215043168	lncRNA gene	ChrX:55411314-55411901 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042763	lncRNA gene	ChrX:56828871-56829457 (+)
CBA/J	ENSMUSG00210046805	lncRNA gene	ChrX:55591962-55592549 (+)
DBA/2J	ENSMUSG00185036663	lncRNA gene	ChrX:68013590-68014177 (+)
FVB/NJ	ENSMUSG00205042875	lncRNA gene	ChrX:54892945-54893532 (+)
JF1/MsJ	ENSUMUG00000046501	lncRNA gene	ChrX:88754760-88755346 (+)
LP/J	ENSMUSG00230036834	lncRNA gene	ChrX:74592815-74593402 (+)
NOD/ShiLtJ	ENSMUSG00190046258	lncRNA gene	ChrX:54831947-54832534 (+)
NZO/HlLtJ	ENSMUSG00225048880	lncRNA gene	ChrX:79797209-79797796 (+)
PWK/PhJ	ENSLUMG00010047197	lncRNA gene	ChrX:54576035-54576621 (+)
SPRET/EiJ	ENSMSPG00010037033	lncRNA gene	ChrX:57658106-57658692 (+)
WSB/EiJ	ENSIUOG00005049635	lncRNA gene	ChrX:55659312-55659898 (+)

Homology

• Gene Tree
  Gm56677
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120229 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120229	Ensembl Gene Model | MGI Sequence Detail	861	C57BL/6J
transcript	ENSMUST00000242001	Ensembl | MGI Sequence Detail	861	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56677:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161303	ChrX:73010091-73010112 (+)	187 bp