Gm56676 Gene Detail

Summary

• Symbol
  Gm56676
• Name
  predicted gene, 56676

• Feature Type
  lncRNA gene
• IDs
  MGI:7337266
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:41237199-41237957 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337266	lncRNA gene	ChrX:41237199-41237957 (-)
129S1/SvImJ	ENSMUSG00200022330	lncRNA gene	ChrX:25172994-25173469 (-)
A/J	ENSMUSG00195025989	lncRNA gene	ChrX:27816486-27816961 (-)
AKR/J	ENSMUSG00220025220	lncRNA gene	ChrX:24865926-24866401 (-)
BALB/cJ	ENSMUSG00180013135	lncRNA gene	ChrX:25591858-25592333 (-)
C3H/HeJ	ENSMUSG00175025083	lncRNA gene	ChrX:28577443-28577918 (-)
C57BL/6NJ	ENSMUSG00215026497	lncRNA gene	ChrX:25584729-25585204 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034521	lncRNA gene	ChrX:27713275-27713750 (-)
CBA/J	ENSMUSG00210035792	lncRNA gene	ChrX:25873193-25873668 (-)
DBA/2J	ENSMUSG00185025074	lncRNA gene	ChrX:36579521-36579996 (-)
FVB/NJ	ENSMUSG00205008192	lncRNA gene	ChrX:24503471-24503946 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230020306	lncRNA gene	ChrX:43076822-43077297 (-)
NOD/ShiLtJ	ENSMUSG00190023410	lncRNA gene	ChrX:25046731-25047206 (-)
NZO/HlLtJ	ENSMUSG00225040018	lncRNA gene	ChrX:48278415-48278890 (-)
PWK/PhJ	ENSLUMG00010038392	lncRNA gene	ChrX:25396981-25397463 (-)
SPRET/EiJ	ENSMSPG00010018608	lncRNA gene	ChrX:26762213-26762688 (-)
WSB/EiJ	ENSIUOG00005039762	lncRNA gene	ChrX:26062011-26062486 (-)

Homology

• Gene Tree
  Gm56676
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000120132 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120132	Ensembl Gene Model | MGI Sequence Detail	759	C57BL/6J
transcript	ENSMUST00000241524	Ensembl | MGI Sequence Detail	759	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56676:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163245	ChrX:41238224-41238229 (-)	-270 bp
Tssr163244	ChrX:41237904-41237918 (-)	46 bp