Gm56675 Gene Detail

Summary

• Symbol
  Gm56675
• Name
  predicted gene, 56675

• Feature Type
  protein coding gene
• IDs
  MGI:7337264
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:22587984-22607136 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  494 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337264	protein coding gene	Chr10:22587984-22607136 (-)
129S1/SvImJ	ENSMUSG00200008962	protein coding gene	Chr10:19426528-19445677 (-)
A/J	ENSMUSG00195006384	protein coding gene	Chr10:19749272-19768423 (-)
AKR/J	ENSMUSG00220010123	protein coding gene	Chr10:19449015-19468178 (-)
BALB/cJ	ENSMUSG00180014984	protein coding gene	Chr10:19872554-19891705 (-)
C3H/HeJ	ENSMUSG00175019279	protein coding gene	Chr10:19551329-19570481 (-)
C57BL/6NJ	ENSMUSG00215003331	protein coding gene	Chr10:19371195-19390347 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029802	protein coding gene	Chr10:19199256-19218408 (-)
CBA/J	ENSMUSG00210015511	protein coding gene	Chr10:19485639-19504791 (-)
DBA/2J	ENSMUSG00185007012	protein coding gene	Chr10:19661033-19680185 (-)
FVB/NJ	ENSMUSG00205015290	protein coding gene	Chr10:19705122-19724273 (-)
JF1/MsJ	ENSUMUG00000007095	protein coding gene	Chr10:19507651-19526990 (-)
LP/J	ENSMUSG00230010762	protein coding gene	Chr10:21471683-21490832 (-)
NOD/ShiLtJ	ENSMUSG00190010192	protein coding gene	Chr10:19804192-19823341 (-)
NZO/HlLtJ	ENSMUSG00225030014	protein coding gene	Chr10:25729245-25748393 (-)
PWK/PhJ	ENSLUMG00010014797	protein coding gene	Chr10:19410966-19430256 (-)
SPRET/EiJ	ENSMSPG00010010579	protein coding gene	Chr10:20057123-20076481 (-)
WSB/EiJ	ENSIUOG00005020995	protein coding gene	Chr10:19083124-19102262 (-)

Homology

• Gene Tree
  Gm56675
  

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000118528 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118528	Ensembl Gene Model | MGI Sequence Detail	19153	C57BL/6J
transcript	ENSMUST00000238910	Ensembl | MGI Sequence Detail	129	Not Applicable
polypeptide	ENSMUSP00000159048	Ensembl | MGI Sequence Detail	42	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 2
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56675:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97042	Chr10:22607235-22607284 (-)	-124 bp
Tssr97041	Chr10:22607205-22607229 (-)	-81 bp
Tssr97040	Chr10:22607193-22607204 (-)	-63 bp