Gm56674 Gene Detail

Summary

• Symbol
  Gm56674
• Name
  predicted gene, 56674

• Feature Type
  lncRNA gene
• IDs
  MGI:7337262
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:40809365-40809948 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337262	lncRNA gene	Chr19:40809365-40809948 (-)
129S1/SvImJ	ENSMUSG00200032446	lncRNA gene	Chr19:37551227-37551578 (-)
A/J	ENSMUSG00195012219	lncRNA gene	Chr19:37651185-37651536 (-)
AKR/J	ENSMUSG00220019089	lncRNA gene	Chr19:37467919-37468270 (-)
BALB/cJ	ENSMUSG00180033795	lncRNA gene	Chr19:37903617-37903968 (-)
C3H/HeJ	ENSMUSG00175042678	lncRNA gene	Chr19:37430149-37430474 (-)
C57BL/6NJ	ENSMUSG00215032860	lncRNA gene	Chr19:37498877-37499228 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015920	lncRNA gene	Chr19:37110072-37110422 (-)
CBA/J	ENSMUSG00210036744	lncRNA gene	Chr19:37512324-37512649 (-)
DBA/2J	ENSMUSG00185033817	lncRNA gene	Chr19:38032477-38032802 (-)
FVB/NJ	ENSMUSG00205008530	lncRNA gene	Chr19:36976641-36976966 (-)
JF1/MsJ	ENSUMUG00000046663	lncRNA gene	Chr19:38200621-38200945 (-)
LP/J	ENSMUSG00230036978	lncRNA gene	Chr19:38821424-38821775 (-)
NOD/ShiLtJ	ENSMUSG00190011249	lncRNA gene	Chr19:37382362-37382713 (-)
NZO/HlLtJ	ENSMUSG00225044775	lncRNA gene	Chr19:42372438-42372763 (-)
PWK/PhJ	ENSLUMG00010001265	lncRNA gene	Chr19:37376205-37376560 (-)
SPRET/EiJ	ENSMSPG00010024658	lncRNA gene	Chr19:37106563-37106918 (-)
WSB/EiJ	ENSIUOG00005039216	lncRNA gene	Chr19:36892687-36893038 (-)

Homology

• Gene Tree
  Gm56674
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121055 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121055	Ensembl Gene Model | MGI Sequence Detail	584	C57BL/6J
transcript	ENSMUST00000247012	Ensembl | MGI Sequence Detail	584	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56674:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159222	Chr19:40809936-40809956 (-)	2 bp
Tssr159221	Chr19:40809915-40809922 (-)	29 bp
Tssr159220	Chr19:40809900-40809907 (-)	44 bp